Gene detail

Detailed information of alvinactis_v1_g30631 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g30631	HELICASE WITH DEATH DOMAIN-RELATED	chr_17	1205636	1223902	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g30631

ATGACAACGTTGGACGCGTTGCACCCTTACGACCACCACAGTAACACAACATCCGTCCATGACAGCCTTAATGGCCTTGATATTGGAGAACAACCTATGGCAGCAGAAAATCCAGGCAACGCCAAACGTCCTTGGCCCTATGGTAGATACTTTGCTCCAAACTCAGGCAACTATCAACATTATGAGAGCTTCAAACACGTGCTGGGGCTGGAGTCGTTGGTGGGCAATCCAAACACTGAGCACGCATATCAAAATGGTTTTGTACCATTTCAGCAACAGGAAAAAGCTCAAACTCAAGAAATGTACAATAATTCAGAGAGGTTTTTAGAAATGGAAAAGCTTGTGCTGGATATTTTGTCAACAAAAGATCGTTGTACCATCTACGATATCCAGAAGAGTCTACCAGCCGTTACTCCGCCAAAGTGCGTTAGCACCACCATGGCAAACCTTGAGAAGAAAGGGCTTGTCGACGTGGTGGAAAATCAGCCATTCACTTGGACGAAAGCGAACCCAAACCATCTAGATGTCAAGCAATCGCTTAACGTGTGTTCTCCTCACAAAATGTATGGAACGACGAGTGCTTTTCTATCAGATAAAACCACTTTACCTGACTTCATGTACGAGCAGACCATATCAAAAGGTGAAAGTCGGTATCGTGAAAACGAAAATGGTTTTGCTAATACAAGTTCCTGCCTAAATAGGTCCGTTTCCTCCCCATCCTTTGAGAAGATATGTCCCGGCGGATTTCCTAAACCACTAACGCGAAAGATGTCAGAGCCAACTCCCAATGCATTTTCCAAAAGGTCCCCTCGACAACGCAAGAATGGCATGATGTGGATATCAAGTGTAAGTGAAGATGGACATCAAAGTGGATCCCTACATGGACTGAATGTGCAATCACTTGAGATCAACTTACATTCACTTCAAATCGCCAAAGAAGCTGAAGTTGGTCGAGCCAGTAATGGTCGTTTGTCATTGCAAGACTTAAGAGCGCCGACAAAACAAGTCAAGCCGAAATATTCTGCTCCGTCTTTCATACCAAGACGTGATCTAGGTGTTATTGGAGGAGAAAGGAACAACAAACCAAATTCAAGGAGTAAAAGCTTTGAGGATACTTGGCTACCTAGAAGGCGATTGAGTTCAAGTGAGTACGACAGACAAAAAGACGTTGGACGACAGCGTTCTCGAAGTTTCGACTGCGATGGCGATACTATGTCTTGCGGTCTCTGTAAGATCTCCTTTGCCTCGAAACAACTATCAGAGGAACACTTTCTAAGCACCAAGCATAGAAATAAAATTGCCAAGGTAACTTCTGACCCCTACCCGAAGTTTTGTGACTACTGCAAAGTTGGTCTCAACTCAAAATCTCAAGCCAATGAACATTTTGCTAGTGTAAGACACGAGCAAACTGTTGCCAAGTCGCAAAAGGCCCCGATTCGTAATCATCCACCCTTGAAGACTCCGACTGAAAATTTCAATCCAGTCATTTTCACAGGCACTAAACCTTACGGGTATCAAGTAGAGCTATACTGCAAAGCTATAACCACTAATTCAGTATGTTTTTTACCCATTGGAACTGGGAAGACCCTGGTAGCCGCACTGACAGTTGCACACTTGCTGCAAATGAATCCTTCTCGTCAGATCATCTTTCTTGTTGATCGCGTTCTTCTAGTCCTACAGCAAAGTGATTATCTGAAACGTGAACTGAGAAACGTGCAGATTCCAGTGTCGGCCAAAGATGAAGAGCCCGACGTTGGATTAAGTTTTATTGGTCAATACTCCAACCCTGGATTGCCTTCCTTAAGGCCACTTCGCATTGGGGCTATATGTGGCGAAATGAGAAAGTTAGAGCAAGGTATTCCTGTTTTCAATCATGATATCCTTGTAGTTACAGCCGATTGCTATCGAAACCATGTCAGTAATGGAACACTGAGATTCGAAGACAGTGCTATGATTGTTTTGGATGAGTCCCATCACTGCAACAAAGACCACCCTTACAATGTTATAATTCGTGATTACTATTTACCCGATGAGATCACCTTGTTTCACAGACCTAAGATATTAGGTCTTACAGCATCTCCTGCTGGGGAGTCTACCTTGGACAGAACTGTCAAGAAAATGCAACGACTCCTTTCCAATCTTGGTGGTGCCTCTCTGCTAACCGTGTCTGATCAACTTCAAGAGTTGACCGAGAAGACAAGCCAAGATGAAATTGTCTGTCGCTATGCTGAATACACTCCGACAGAGAAGACCTTACTTGGCCTTTTAATGGAGCATGCCACCAAGTGCTTTAATTTAGCGGCTCGGGTGAGCGAGTTCAAGGAGTACAAGGAGGTCTTCCAGCCGTCGTCTGGAGGCGTTTTGTCAAAGGATGACATATATCCCATCCTTGGTGTAATTGACAAACTCGTTTCCTCGAAGCAGAAAACGAATCCAGTCCACTCCTTATTGCATTTCCAGATCGTTTGTGATTCCATTTGCACCCTCCAAGAATGTGGGGAGAAAGTAGCATGTGATCGAATGCTAGAGCTGCGTTATCGTGATTGTCCTTATGGATTTGACTGGATACTGGATCAAGGTCTACCTTGCGATAATATTAGGTCATATCTGGAGCAATGCAGTATTGGAGCATGTAGGAAGGATGACATGGGATCAGGCGTCGCTGAGCTACTCGAATTATTGATTATGAAGATGGAATGGGTCGAAGAAGAAGACGACGAAGATTGTTATAAGCCTTTAGCCCTCGTCCTTGTGAAGCGACGTTGGACTGCAGAAAGTCTGGCTGAGTATCTAGATTTGTGTCCAAGGCTCCGTGCCAGGGGCGTGAGGACTACGTGCATAGTTGAGCATGAAGCACGAGGCACCAATCGAGGACCTCCTGTCAACAACATAGGTATGACGATAACACAACAGAGGGAAACATTATCAAATATCCAAGAAGGTGTATTCCACGTTATCGTGGCAACCAATGCGTCAGAGGACAGCCTGGATCTACCCTCCTGTAAACTGGTTGTCCAAATGGATCCCCCCAACTCAGTAACTGCACTGGTGCAAATTCGTGCGTATGCTAGAGATAGCAAGACGTCGTTTGCTGCCATTTGTCGGGAAAAAGACCTGGCGAAGAAGATCAAAGACCTTTTATTAAGGGAGAACAATATGATTCACGCGGCACAGATTATCAATGgtgatagaatgaagaaaaaatgcgaagaatgcgatgtatttgatcctatcgagtttcaagatttctcatcatag

Transcript

alvinactis_v1_g30631

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04851	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR006935	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-