Gene detail

Detailed information of alvinactis_v1_g29329 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g29329	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	chr_16	2210176	2240135	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g29329

ATGGTCCATGACACATCAAACACTCTTGTTCCAGTAAATGGCAGCAACGTTTCTGAAGATCCAAAGGTTTTATGTGTCATACGAGATGAGACATCGGTAGACTGGCATAGTTCCTCTTTCACAGTAAACCTACCTTCGTCTTCTCCAGTTGAAGAGTTGGTATCTTATGTGTCTAAAGAGACGAACTATGCCGAGAACTCGTTCTCGCTGGTATGGGTCAACTCTTTTCAGATCGTAAGTGAGAAAGATGTGCCGCTAAATGGAGTTAGTGGAACTACTTTGGTCGAGTTTGGCCTGTCTGTAGGGGGACGCAATCATTTCTTGATCAAGCAGAAAGATGGAGTACAACCCAGAAAGTTGAAGGAAGGACAAGAGAATGCTGACAGCCCTAACAGTATATTTCAAGAGAGTAATGCAGCCAGTGCAGGCTCGTATTCTGGCTCATATTATTCAGGGGATCTATCGTACTATGGAAAATCTGACACAGGTTTTGTTGGTTTGGTAAACCAAGCTATGACGTGCTACCTAAACAGCCTGATGCAGACACTTTACATGACTCCAGAATTCCGCAATGCTATTTACAAGTGGGAAGCAACAGGCAGCGAGGAAAAAGACATCAAGTGTATTCCATCACAGCTTCAAAAACTATTCTTGCAGTTACAGACCAGTACAAAGAAAGCTGTAGAGACTACGGATTTGACCAAGAGTTTTGGCTGGGATAGCAGTGAAGCGTGGCACCAGCATGATGTCCAGGAATTATGCAGAGTGATGTTTGATGCATTGGAAAGCAAATTTAAGGGCACAGATCAGGAAGACTTGATCAACAAGCTTTATCAAGGAAAAGTGAAAGATTATGTCAAATGTCTTGAGTGTTTTAATGAAAGTGCTAGGACAGACACCTACCTGGACATACCCCTTGCTATACGACCATTTGGCGTGGACAAAGCTTTTGGAAGTGTGGAGGAATCTATACATGCATTTGTTACACCTGAAATTTTAAGTGACACAAATCAGTATTTTTGTGAAAAATGCAATAAAAAATGTGATGCTCACAAGGGTCTCAAGTTTCTGAGCTTTCCATATCTGCTGACTTTACAACTAAAAAGATTTGCTTTTGACTACAGCACTTTACACCGTATCAAACTGAATGACAGGATGACTTTTCCCAAGTTCCTTAATCTTAACAGCTTTATTGATGAAGGAGAGAATTCAACTGATGATGAACAAAGTATCAAAGGTGAGTCTCCAAGCAGCACAGAAACAGACAGTGGAGTTAGTGAAGGATATTCTGACAATGGCATCTTGACTGAAGACGAAGAGCCATCTAGTGTTGCTGCTACTGCTAGAGAAGACGTCCAGAGTGATGACCAGTCAGATGTCCAGGAAGATGTTGGTGCAATAAGGGAACCACTGCCAAACGTTGATGACCTAAAGGGTCCCCACATCTATGAACTATTCTCAATCATGATTCATTCTGGCAGTGCAAATGGTGGGCACTACTATGCGTATATCAAATCACTATCAGATGGTTGTTGGTACAGTTTCAACGATCAGTCTGTAACAAGGCTTGGTAGTGGAGAGATTGAAAGAAGTTTTGGAGGATCAGAATATTCAAGGGGATATTACTCTTCCATATATTCAAGCTCAACTAATGCCTACATGTTGATGTATCGACAAGTCAGCCGACAAAGAAACTGCAAAATCCATGAGCTACCGCTGCACATCATGAAACTATTCGAAAACATCAAAAAACAGGAAGAAAAGGAACGGAAAAGAAAAGAAGATGAAAAGAACACTTGTAAGATCAAATTATTCTATAACCATCCCTTATTGAAAAGGATTTGCGAAAGAAAACTTGAAATCCACAAAGACAAGCCACTAAGTGAAGCTGTGAATATCGCTAGAATGCTTTTACCTTTGGATCCCAAATATCCCAATGAACAATGTCGTCTTGTGAAATATGATGAATATTATGACACAATTGAAATATCTTATGATGGCGAAGAGGACACACCCATGGGCATTCTTTTGGGTGGAGTCAAGACTTCTTATACCTATGAACTCCTGTTAGAAACAAGAGAACCTCATGAAACGTTTACAGTTTACAAAACAGGAGGAACAACTCTCAAAGTTCATAGAGTGGACTTGGAAAGCCAAGAAGTCTTCCCTCCTGTAAATGTACGAGCCTACTTGGAAAACACTGTCAAAGAACTTAAAGAGCACATTGCAGAGAAACTTGGCATGTCAGCAGAGAAGATGAAGATCGTAACGGAAGCTGCACAATATGAACTCAAAGTACTTGAAAGCCCAAATAAGGAATTAAAAGATCTAGGTTTCTTCAAGTCAGCTAAAATGTTCGTTGAAAGTTCAGGAACAGAAGATGACTTGCTGTTCTCTGACTCCAAATTGTATCGAATTCTTGATGCTTATCAATATACTATCAAGCTATTAGTATCACTACCTGACCCAGCAAACAAACCTGACTGTAACGATTTGTCTGTGTTTGTGTATGAGATTCCCAAGGAATCAACTGCACCTAAAGAGAAGAAAGAAAAAGAAATAAATGTGGATAAGAGAATGTCTTTGGCTGAGTTTAAGAATAAACTATCATCACTTGTAGAATGTATGCCGGAGTTGTTTAGGGTTTACCGAGTGTACTCCAACAATCAAGAAATTGAATTAGTTCGACTGCAAGATAAATTAATAAATTTTATTGATGATACCAAGATTACAATCAAATATGGCCGTGCCTTGAAAAAAGACGAATACCATATTAAGATCAATCTACTAAAACCAAACAACACTGAGGAATTATTTCGATATCTGTTTGACTGGGTTGTTCATAAAGGAATGAGTGTAGGAGAGTGTAAAGAATTACTCCTTCCAGAATTACGTAAAAGATGTAACTTCCAATCACCGGTACAAAACTTACGATTACGCAAAAAGACATGGAAAAACCCAGGCACAGTGTACGTGGATCATCAAACCTTTGAGGAGGATATCGCTATTTATGCTAATTTGGAGGTTTTTGTGGAAGAACTTGAAGGTCCAGAACGAGTCACAACAACACAGATCATTTCACTATACGTGAGTCATTGGAAACCATCTTCACTCACCTTTGGACCCTTACAAGAAATAGTGCTAACAGAATGTACTGTAGAGGAATTAAAAGATGAGATTTCCATACTTAGTAACATTCCAGTGAAAGATATCGAGTTTGCAAAGggtcgaagcccattcccatgcatcgcgcctgtactTGAAATAAACGATCTTTTAGACTGGAATTCAAGCACAACCCTACTACGCACCAGTCCCCTTTGTATCACCGATGATGGAGCGGTCGTTTTTTACAGAGATCGAACAGAAACTATGATGGAAATATCTGAGGAGCAAAAGCAAGAAATCTTAAAGAAAGAGAATGCTAAACCCAATCCAGCGCCCTCCAAACCTACTGCGTTCTCCTACAGAGAAAAGGCGCTTAAAATTTACAAAGATGCGTTGCCTGGTTACCAATTGTTTGAGGGCGATATGATGTTCACCAAAGCAGAAATCGATGCGGCCGAGAATGGACTGGATCCCAGTCGAGCAGACGGAGCTCGAGGTCTCATAAAGTATCGCCGCTGGCCAAATGGAGTGATGCCGTATGTTTTAGACAAAAGTGTCAAAAACCCGTTTCTTAATTCGTTGGGTATAAAAGGACCGACAGAACGAGCGATAATTAGCGCCATGAAAGAATGGGAGGAGAAGACAtgcatacgattcgtgccgagaaccaacgagaaagactacgtggagttctttgatggttcaggTTGTTATTCCTACGTTGGACGAGTAGGGACAGGGAAGCAACAGATTTCGCTTGATTTTGGTTGCTTTACTCACGGCATTGTTGTACACGAAATTGGACATGCGCTTGGATTTTATCACGAACAAAGTCGTCCAGATCGAGACAACTACGTGAAAATCGTCTGGGACAACATTaaagaaa

Transcript

alvinactis_v1_g29329

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF01400	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF19718	USP47_C	Ubiquitin carboxyl-terminal hydrolase 47 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001506	Domain	Peptidase M12A	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR034035	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR045578	Domain	Ubiquitin carboxyl-terminal hydrolase 47, C-terminal	Interproscan
IPR050164	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-