Gene detail

Detailed information of alvinactis_v1_g29097 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g29097	CELLULAR TUMOR ANTIGEN P53	chr_15	20386678	20407983	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g29097

ATGAGTCGTGATCGAAGAAATCGTGTTTTCGTTGGAAGATTACCTCCTCGTATTGAAGAACGAGAATTAGAGAAGTTTTTTCGAGGTTTTGGCAAGATTCTCGACATTAATTTGAAGGTTGGCTTTGCCTTCGTGGAATTTGAAGACGAACAGGATGCTCAAGAAGCTGTTTACGAACTAAACCACAAAGAACTTCTGGGAGAACGAGTCACTGTAGAGAGAGCTCATCCAAgtcgtagtggtggtggtggcggcggcggtggtggtggcggcggcggcggcggtggcagcgagagaggaggcggcagctatggcggaggagggggaggaggcggaggaggcagACGGTCTGGTGGATTCAGCAGTCGGTATGGTTCTCCCTACAATACAGAATGGAGAGTTGTAGTTGAAAATCTATCATCAAGAGCAGGATGGCAGGATTTGAAAGATTTCATGCGACAAGCAGGAGAAGTAACATTCAGTCAATGTCACAAGGACAGAGTTGGCGAAGGAATTGTGGATTTTGCCTCTGAAAGTGATTTGCGACGTGCTCTAAAGAAATTGGATGGTTCAGAATTATTGGGCAAAAGAATCAGATTGGTTGAAGGGTTAGCAGTATATCAATTTATAGCGCTGAAAGGGAAGTCCAACTTGTCTAAAAATAAGATTTACCGCGGTGTGAAATTCCAGTACATCACACTGGTACTGTATTGCCCCGCTATACAACATCAACTCGGTGAGATATTTTGCACACGGAAAATGGCAGGATATGCGCGCGAATACCAATGGAACAGAGTGGAAAACCTCTTCCCCGTCAGCGAGTCTTTTCCTGAAATCTTTCTAACGGATGAACAAGTTAAGATCGAAAACTCAGACACGAGAAGAATCGACTCTACACCAGCACAGCTTACAGACGCATTACAGAGTCAAGACTACCCTACATTTCCACAGATAGACGATCATGATTACCCAGAACCCCTCACTCCAGAGAGTCCAACACTCCATCACCCGGGTCTAAGCTGCTTAATGCCATCAGTACCACCATCCCACGTCATCTCGCCATCAAGTGGTGATATGAGCGGAGAATACAATTTCTTTCTTGCCCTCGAGACGCAGCCCAAGAAAGTGgctaatccagactggattTATTCACCAGTCCCAAACAAGTTATACATCAAGCCGCAGACACCTTGTCCTATGAAGTTCTCTCTCACAGGATCTCCACCTCCACTTACATACGTCAGAGCAATGCCGATGTTTAAGTTGCCAGAACACGCTAAGGACGTTGTACGATGCTGTCCTAACCACACCCTACTGGACCAGTCTAACAGAGATAACCCAGCGTCAGGACACTTTATTCGTTCAGATAATCCACAGGCCGAGTACCAACGGTGCAGCCATTCTGATCGTCTGTCAGTTAGAATACCTTTTCAAATCAATGTTGGTGCGTCAATGCACGAAGACGTCACTGTACACGAATTGTTCTCATTTGTTTGCAACAATTCATGTGGTGGACTGAACCGACGGGCAATACAAGTCGTGTTCACACTGGAGACTGGAGAATCCCAGGAATTACTCGGCCGATGTGCTATTGAAGTACGCGTCTGCGCATGTCCCGGTAGAGACTCTAAACAAGACAATGAAGCTGTTAGCAGACCAAGCAGGAAAAAACgaaagatgtcagGTGACGTAACGAGTTCAACTCCAGTGACGTCCTTTCCAACATCTGAGCTCAGTCCCAGTCCATCACGATCTGTAGAAGACAACACGGTTTACAACCTTAAAGTCTGTGGATACGTCAATTATCTTATTCTGAGGAAAATTGCATTTGCACTGGAGTTCTTTGCAAATATGAAATCTAGATTTTCAACTATGCCTTGTGATGATCCTGAATTTCCTGACTTTTTCAGTGACGGTCTAGCGGAACAGCAAGAATGTGAAGGCAATGCACCAGTTGCAAGACCCATTCCACAAGCGTCACCTGTCATGAGTAGTCAGCAGTCTCTACCAAACTGCGCAGTATCACGTAGTTCTGATACAAACGGAGAGATACAAAATCCAAACCGCAGCAAATCAGTTGTTGAAAAAGTAGAATCTAATCAAGAAAAGAGAGTTATAAGACATCAAGATAGTTAA

Transcript

alvinactis_v1_g29097

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	P53

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00870	P53	P53 DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002117	Family	p53 tumour suppressor family	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR011615	Domain	p53, DNA-binding domain	Interproscan
IPR012346	Homologous_superfamily	p53/RUNT-type transcription factor, DNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11447	CELLULAR TUMOR ANTIGEN P53	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-