Gene detail

Detailed information of alvinactis_v1_g28662 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_15:14009695...14035155
NR annotation: XP_020897174.1, translation initiation factor IF-2, mitochondrial [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g28662

atgctgattggtcgacctaggaaggtcgaccaatcagaaatgagaGTCGTTACATGCCCTTTATGTAGTGTTTGTAGATCATTTGCATCTCATGCAACACAGACTGTCAGAAAACCTAGACAGAGCTCTTACTTGAGACTGTTTTCTTCCAAGGATGTTTCATATAGTGAGTTTAGAAGGCTTGCATCGTCTAGCAGCAGTACAACTATTGGAGGACCAAATATCACAAGGAATCAACATACTGCATCGCCTAAACGAAGGACACGTAATGAGAGAAAAGAGTACTTCCAGGGTGTTGATGATATCATCACATCAAGAATTACTGTCACTCAACTAGCGCATCAGCTTGGCATCAATGAAGAAAAGTTGGTTGAAGTTCTAGAAGACATGGGTGAAGATGTACATAATCTAACTTCAGctattgccccaatggtggagttgtTGTGTATGGAGTCCAATAAATCACCATTAATTGAGAGAAGACATTCTGAAAGGTTAGTGTCTAGACCGCCTGTAGTTACAATAATGGGCCATGTTGACCATGGTAAAACTACACTACTTGATGCTCTACGTAATAGCTCCATTGCTGCTGGTGAAGCTGGTGGCATTACTCAACACATTGGTGCCTTCTTGGTTACCTTACCCTCTGAAGAGCTAATTACCTTTATTGATACACCTGGTCATGCCGCCTTTGAATCCATAAGAGCACGGGGTGCTAATGTCACAGATATAGTGGTGTTGGTTGTGGCTGCTGATGAtggtgttaaaacacagacggttgagtctatcagacatgctgtgcatgctaaagTTCCAATAGTTGTAGCTATTAACAAGATTGATAAAGGAAAAAAGAATATAGATCTCCTTAAACAGCAGCTTCTTTCACACGGCATTCAGCTGGAGGAGTATGGTGGCGAGGTGCAAGTAGTAGAGATCTCTGCACTCAAGGGTACAAACTTAGACAGCTTAACAGAAGCCATCATAACCTTAGCAGAGATAAACAACCTGCGAGCCAACAAGGACACCAATGTTGAGGGTGTGGTCATTGAAGCCAAGAAAGACAAAGGACTGGGGCCTGTGGTGACAGCTCTGATTCAGAATGGTACTTTAAAGAAAGGTGACATTATTGTGGCTGGAAGTACATTTGCAAAAGTACGTCAGATGTACACAGACAGCGGAAAAGTGGTCGACGTTGCCCCTCCCTCTACTCCAGTACAAGTTACAGGTTGGAAAGAACTGCCAGCTGCCGGCGAAAAAATCCTCCAAGTAGAAACAGAGAAAAAAGCCAATGAACTCGCATCATCAAGAAAAGCGTATGAAGAACAGAAGAAGAAAGCATCTTTATCAGAAGGGTTTAGTGTGGAGAACTTGATGAAAGAAGAACATGGACGACGAACAAAGACCTCTAAAGGAGAATATGACGCTACGAATAAAATCGATGTGGTGGTGAAAGGTGACGTGGATGGTTCAGTAGAAGCTGTTGTCGATGCTATCAAGACGTACAAATCTGATAAAATCAAACTAAGCGTCCTGCATGCCGATGTTGGCTCAGTGTCTGAGTATGACATCAAGAAAGCTCACTCGTTCAAAGGTGTGGTACTAGGCTTCAATATCAAGATCCCCAAGGAGATCCAACAGCTTGCTAAACAAATGAATGTCCAGATAAAGAACCATAGAGTCATCTACAAGCTGCTAGCTGACCTCAAGGATGAAATGAGTAGTCGCCTCCCTCCGATCAAAGAAGAGAAGACTCTTGGTGAAGCAGAGATTCTCAAGGTGTTTAAGCTGACTGGCGTAAAGAAAGCCTCCGTGGCGGGATGTCGCGTTAGACAAGGGGTACTCAACAGAGATAGTCGGTGCAGAATAGTACGTGGAGATAATACCATTTATGAAGGTAAATTCACATCTCTAAAGCGAGGACCAGATGCCGTTGATATCGTCAAAAAAGAGCAAGAATGTGGCTTAAGCTTTGAGAAGTTCTCTGGGTTCAAAGAAGGAGACAGAATAGAGTGTTTTCAAATCAACACGGTCCCAGACGAGGTGGACTGGGAATGGGGTTTCTAA

Transcript

alvinactis_v1_g28662

Protein

Uniprot

Uniprot term	Description
Q91YJ5	Translation initiation factor IF-2, mitochondrial OS=Mus musculus OX=10090 GN=Mtif2 PE=1 SV=2
P46198	Translation initiation factor IF-2, mitochondrial OS=Bos taurus OX=9913 GN=MTIF2 PE=1 SV=1
P46199	Translation initiation factor IF-2, mitochondrial OS=Homo sapiens OX=9606 GN=MTIF2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF11987	IF-2	Translation-initiation factor 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR036925	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR000178	Family	Translation initiation factor IF-2, bacterial-like	Interproscan
IPR023115	Domain	Translation initiation factor IF- 2, domain 3	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044145	Domain	Translation initiation factor IF-2, domain II	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR015760	Family	Translation initiation factor IF- 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02519	infB, MTIF2; translation initiation factor IF-2	-	Mitochondrial biogenesis	ko03029	deepkoala