Gene detail

Detailed information of alvinactis_v1_g26884 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g26884	SAM DOMAIN-CONTAINING PROTEIN-RELATED	chr_14	12724658	12846686	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g26884

atgagtactggagacagtctcaatgatttacgacgtatctttaatgataggtacgcactttatttttatttgaaattaaccaaagcagatttccaagaaagcattcaaacagcggttataagagcattaacgaccagtttggaggaattgagattacaactgataaacttgccaacaaaggaactacagagcattgagaagcaattaaatgacaaaGCTAAAGGTGTAGTGAGGAAAAGGGGACCCAAGCCTCTAGCTAGGTACACTGGTAATGGGCCGATCCAACTGTGGCAGTTTCTTCTTGAACTTCTGTTAGATCCAGCACACAATAAGACAATCATTGAGTGGACCCATGACCAGAAGTTTGAGTTCATGCTACTGAACCCAACCTTGATTGCTACTATGTGGGGAAAGAGGGCGAACAAGCCAAGCATGAACTATAAAAAGCTAAGCCGTAGTCTAAAGTACTACTACGACAAGGACATCATTGACAGAGTTCATGGTAAGCCGAAGTACGTGTACCAGTTTGTGTGCGATATCTACAATATCTTAGGATATGATCCCACCGAACAGAAGACTGAAGGAAATGTCGAGGATGCTGTTTGTGGAGAGCCTGAAGTTGCTGCAGAATCTCCCGCATTCATCACTGGTCATAGTCCAAAGAGTCTACACAGTGTACCAGCGGAGATAATTGCGCGTGGCCCCAAAGCTGAACAGGCATATCGTAGAGCTTTGGAACAAGGCAAGGTATCTGTATATCGTGGACGTATAATGATTATTGGTCCAGAAAGAGTTGGCAAAACTAGCCTACGAAAGTCTCTTTGTGGTCTGCCGTTTAATGCTGACGAACCAAGTACAGTAGGGGTAGATGCGTCTCTCTGTTCGCTTGATATAGATCATGTCATGATCAAGAATTGGAAACTCAAAGACGATGACAAATTACTGGGTGACGATGTTATCCCTCGCATGGTCGCCATGGATCTGAAATCAGCAAGAGATGAAGCTGAAATACCTATGCAAGAAGGAAGTCATGACAACATTGAAGATAGAACAATCGCCCACAATGAAGAGAAGATGGAAGAAGAACAAGAATCAGCATCAAATGAAGGAATCGAGGAAGCAATGACTGCCACACCTTCTCTTCCTGATAATTTAATTCACACTGTAGTAGAATCCAAGACAGAAACGCGTGTCCCAGATGAAGTAACCGAGAGGTTGATTAAGTTTCTGCAAGATGAACATTTGGATACAACGATAACAGACAAAGAAGTCACTATCAGCATTTGGGATTTTGCTGGCCAACAGTTATACTACGCATCGCATCAAGTATTCATGTCTCAACAGGCAGTTTATGTTCTTGTTTACGACCTCAGCATAGATCTGGATGCCAAGGCAGCACCTCGTGTACGTCAAGGCACATTGGCTGATAGATTACTAGATAACCCCCACGACGAAACAAATTTAGACGGTACTTTGTCATGGCTGGCATCGGTCCATAACCTTTGTCAAGACGACGAACAAAGGGATTATGAATCCAAAACAGAAAAAAATGCGAGAATCCATCCTGCAACACCCTATCGACGCCCTCCAGTCATCATTGTTGACACGCATGCTGATTCTTTATCAGTTCAAGATGCCAAAGAAATGGAAAAGAAACTCCAAATGGGGCTAATTTGTAAAAGCTACCAGAAACATGTCGTGAAGCCATATTTTGTCGTTAGCAATGACAACTCCTCGGATGGCTATGATGAAGGTATTCAAAAGCTCCATCAGAAAATCCAGGAAGTGTTTGAAGAGGAACCGTACATGGGTAAAGAAGTACCTGTACGCTGGCTTCACTTCGAAAAGGCTATTCAGAAAATTGTGGAAGAAAAGAAAACCTACTTTTTGCGAGTGGAAGAGGTGGAAAAGGTCGCCAAAGACGTTTGTTTCATCGAGGACCAAGATGAGTTCATGACAATGTTAGACTTCTACCATGACCTCGGCATTATCATAAAATATGGTGCTACCGTTGTCCTTAACGCTCAGTGGTTAATTGGATTGTTCAAGACGCTTATTACCATCAGGCCTTACGATGACCAGACGGATTCCCGATACACAGAACACTGGATAGAACTTGAGAAGAGTGGGAAGCTTAGCATGGAACTCGTAGAACACGTTCTTGGCGAACAATTGACGTGTGGTCAGGCTAAAGAGGACTTCCTGAAAATGATGGAACACTTTGGACTGATTGTGCCGTTCATGTCAAGTGAAGATGGGAATGAGCATTGCTACTTTGTGCCCTCGCAGTTGATTTCCTCACCCAGTGAAGTTTTGAACCAGTGTCAAACATCACAAGGTCCCTGTCCATTATACATCCATTTCCTCGATGGATTTGTTCCACATGGGTTATATCCCCAACTGGTTTCCAAGTTCATTTCCTGGTGCTCCGCCAATGCGGGATGCCACGCCGCCGTAGAGCCGCCGTGCCTGTATCGTGACGCATCAGAGTATATTCTCGACAGTTCTTCCCGAATCTCTATGACAGTTGTGTGTTGCAGGAGCTTCATCAAGGTGTTACTGCAGTGCAAGTCTGAAGACAATAATTCAGGTCTTCATGTCAAAGCTGTCGAAGTAAAGAGTTTCATCGAAAACACCTTAAACGAACTATCAGAGCAATGTTGGTATCGATGCTTGAGATATAAGCTCTGTGTTAGATGTCCAGGATGTTCAAAGAAACCCTGCATTGCACATCTACATTCCTCTTGCGCTGATGAGAAGTGCTTGCACTTGTTGCCGATCATCAAAGATCAGCCATTTGTGTGTAGGAAGAGCTGTGGTGACGATCGATGGCCAGACGTACCAGGCTACCACTATTGGTGCCCAGAGATGCACTCTGCTAGCATAAAAGCAGATTTGCCAACTATTTGCAGTAGGGGTGCGTCACTTAAAGGTACATTAAAGCTTGGTGACAATGTAAAGAGATGGCTTGTTGTTGGTATCGCACTCAATACAGTGCTGTTGTCACCTTTACGGAACTACCTTGAACCATTTATAGAAAGCCACTACGAGAGTCTCAAGAGCAGTCACCCCAACATTCATACGCAGAGTTATGCAAGTCATTTAAAGAAAGACGTATTAGCGACGTTGAATTATGTAAACATCAACAGCAATGAAGAAGCCAAGAAAGCTAGAAACTACGACTACTGTGTTACATCTTTTGTTGATTTGGCCAAGTTGTATTTAAAGCCCTTCATGGCTAAATTTACAGGTTTCAATGAGACTTGTGACGCATCAGCTGTACTTGGTATTCTTGCTTCTGCTAGCGTATTTTCTACAGCCATTCAAGATCTATGCAAACAAGTGAGGAAAGACGTAAGAAATAAATGGGGCCACTGTAAGATCCAAGAATGGAATGAATCAAATTTCGATCAATGCTTTGAGACGATGGTTGAACTTGTACGGAGTTTGGGTTTGTCTTCAGAAGTCGAGAAACGATTGACTGATGAACTCAACGAATGGAGAACTGAAGGAGTCCAAAGTCTAATGCCAGAAGGCGAGATAAAGTTGCTCAAGGACAAAGTCAGTGATCTCTCAAAAGATCTGCCATCACTTGTCGACGATGATGTAGAGCGGGATGAAGTGAACAAGCTGTTGGAGAGTGTGCAGAAGGCTATCGAGATATTGTTAATGGAAATACGACAGGAGGTTAAATCGCTGAAAAGATCTCATGAGGAACTGGAAGAAAGAGTTGATTCACAACATgaatcactgaaggaatcacacaaatcaatgaagaaatcacacgaatcactgaaggaatctaacgaaacactgGAACAACGCGTAACTGAGTTAGAATCTTCTCGACGATGA

Transcript

alvinactis_v1_g26884

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ETS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00178	Ets	Ets-domain	Domain	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000418	Domain	Ets domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47508	SAM DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-