Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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Genomic Location: chr_14:4240894...4285688
NR annotation: XP_031567290.1, U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Actinia tenebrosa]
| CDS | |
| alvinactis_v1_g26337 | |
| Transcript |
| alvinactis_v1_g26337 |
| Protein |
| alvinactis_v1_g26337 |
| Uniprot term | Description |
|---|---|
| O75643 | U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2 |
| Q6P4T2 | U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1 |
| F1LNJ2 | U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02889 | Sec63 | Sec63 Brl domain | Family | Interproscan |
| PF00270 | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| PF18149 | Helicase_PWI | N-terminal helicase PWI domain | Domain | Interproscan |
| PF21188 | BRR2_plug | Pre-mRNA-splicing helicase BRR2 plug domain | Domain | Interproscan |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050474 | Family | Helicase Hel308/SKI2 | Interproscan |
| IPR004179 | Domain | Sec63 domain | Interproscan |
| IPR035892 | Homologous_superfamily | C2 domain superfamily | Interproscan |
| IPR011545 | Domain | DEAD/DEAH box helicase domain | Interproscan |
| IPR041094 | Domain | Brr2, N-terminal helicase PWI domain | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR048863 | Domain | Pre-mRNA-splicing helicase BRR2-like, plug domain | Interproscan |
| IPR036390 | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR014756 | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR036388 | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR003593 | Domain | AAA+ ATPase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47961 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0016887 | Molecular Function | ATP hydrolysis activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12854 | SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2 | EC:5.6.2.6 | Spliceosome | ko03041 | deepkoala |