| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| alvinactis_v1_g26214 | DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2 | chr_14 | 2511773 | 2532284 | + |
| CDS | |||||
| alvinactis_v1_g26214 | |||||
| Transcript |
| alvinactis_v1_g26214 |
| Protein |
| alvinactis_v1_g26214 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | DUB|USP|USP |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00929 | RNase_T | Exonuclease | Family | Interproscan |
| PF02225 | PA | PA domain | Family | Interproscan |
| PF13423 | UCH_1 | Ubiquitin carboxyl-terminal hydrolase | Domain | Interproscan |
| PF20770 | PAN2_N | PAN2 N-terminal | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003137 | Domain | PA domain | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR013520 | Domain | Exonuclease, RNase T/DNA polymerase III | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR028881 | Domain | PAN2, UCH domain | Interproscan |
| IPR028889 | Domain | Ubiquitin specific protease domain | Interproscan |
| IPR030843 | Family | PAN2-PAN3 deadenylation complex catalytic subunit PAN2 | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR038765 | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR046450 | Homologous_superfamily | PA domain superfamily | Interproscan |
| IPR048841 | Domain | PAN2-PAN3 deadenylation complex catalytic subunit PAN2, N-terminal | Interproscan |
| IPR050785 | Family | PAN2-PAN3 complex catalytic subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15728 | DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000289 | Biological Process | nuclear-transcribed mRNA poly(A) tail shortening | Interproscan |
| GO:0000932 | Cellular Component | P-body | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004535 | Molecular Function | poly(A)-specific ribonuclease activity | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006397 | Biological Process | mRNA processing | Interproscan |
| GO:0031251 | Cellular Component | PAN complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
