Gene detail

Detailed information of alvinactis_v1_g24466 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g24466	RING FINGER PROTEIN 31-RELATED	chr_13	4720641	4734022	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g24466

ATGTCAGAAACATTGTCTACCAATGCTTCCTCAACAATATTCACAGGAACAGGATACTCTGTTACCTCTGCTGTCTCTAGTATGAGAGGGAGTGAAAACCTACATGATGACACACATTCTAAGGCCTTGGCTGGTCAATATGCATTGCCAGCAAGAGGTGTTCCAGTTTTTCCACGCCCAATGGCCCGGGAGACAATTCCTTCAGCAACCTACTTGGGGCATCCTATTTCAAGTGTTTCAACTGTTCATCATCAACATGATACCACCACTAACTTTTCAGATGACAGAATGATCATCACAAGACGTCCATCAAGAAAATTACAAGATCCAGAAAAAGCCCTTTTGAGCAGAACAAAATACATGAAGTTGAAATATCGTTACTTGGATATGTATATCACTGGCCAGGCTTCAAAACTGGAACTGTGCAATGATTTGATATCTCTGGACGTTGAGATGAAGAATAAGTACAAGGAGTTGGATTTCCAGGCATTGTTGGATAAAAATATGATGCAAAGAAATATGAACTGCTTGACCCAGACGTTGGGTATCCTAGAAAAATACGCTTCAAACCTCATTAAACCCAACAGACCAGCTGTCTGGCGTACAGTAAAGTTCACCAGCAGCCTCGTCAAGACATACCTTGAAAATGTCCAAGGAAGCCATGACATCCTGAAGCAGATGGGGTACACCAAACCTGTGACAGACGGTCTTTCATTCCCTGACGATGTGACAGTGCCAGACGTTGAGAGAATCAAAGTTCTTGCAGGAGAATTGTTCCTGGCAAAGTATGAAGTTGATGAACTGATTCATGATAGACATCCGTACCTGCATATTCACACAGCGTTCAGTGTCGGAGGAGGTGCAACCAGTTCTTCTGAAGCTGCCATATCAAAAGTAAACGTTCCAAGATCAGAACCTGTCACAAGTGAAGACAGCGAATCTGAATATGAAGATGCTGAAGATGGGTTATCCACAGTGACCGAGTCACATACTGCAGTGTTGTCACAGAATGTCCCCATTTCTCAAGCAGCAGACAATGTTTCTGCAACAGATGAACTACAATGTCATGTTTGTGGAGATCAAAACCCAGTTAAATTTTCTTGTGCAGAATGCAAGGAACATTTCTGCTCAGGCTGTGTGGATGCTTGGCATCAAAATAAAAAACGTCACAATCACACATTAAAGGATCTCACATTATCTCGTGCCGGTGTGAAAAGAAGAGAAGGAGTTCTCCATCACCTGTCTTGCATGAAAATGCGACGCCCAGACCAATTAAAAAAGCCAGTTCCAGCACCTCGAAGAAGAATCCCAATAAGCACCAAGCCTCTTGAAGGTGGAAAAAGTATGCCATACATCGCAGcacgaccaagagtcgtctcaacacgaccaagtgttgtaccaacacgaccaagtgtcataccaacacgacaaagtgtTCGTGATGAGTTGCCGCCACCTCCCTTGGCAAGGAGAGTTACACCAGATCCAACATTTTCAAGAAGCACCCAAGGGGAAACAGTTGCGCAACAGCCAAGTGCTCAAGGTGAACGTGAAGTCTTACGACCACCGCCCTTTGAATATAACTATGTACCATGTTCGAACCCTCTGCCGTCAGATGACAATGATGAAGGTCTTTATGAGTCCTTGAAGATGCCTTCAGAACATAACTATGAAGCGCTTGATCTCAACATGGGAGATGAAGTTCCAGAAGAAAACATTCCCCCCCCTCTTCCACCACCAAGAAGCAAACCAGAAAAGCCTTCAGTGTCGGTATGCCCTCATTGCTTCTGCTTAAATGAAAAAGATGTTATTAGATGTGTTGCTTGTGGAACACTTGTACAAGAAGTTCAGAAAACTCTACCAGCAAGGTCGCGTCTGTTAACACGTGACACTGAAATGCTTGGTGATACTTCAACTATAAATCTACCCGTGCAGTCCTTGCGAAAGCACTTCGATCTCTCACCAGGATCCAATGTCCCTTCTTCACCTATTGCTTTTGGAAACCAAACCTACACAAGTAACATTTTTGGTCCTTCAACAACACCATCAAGATTACCTGGACACTCTACTTTAAGTGGCATTGCAGGTAGTTACTCGGGATTCCCAGGAATGGTTGCAACAAAACAGCGAACGTCATCAACCCAGAAGTGGGAATGTGAACATTGTACTTACCACAATGATGTAGGGACTAACATCTGCGTGATGTGTTCCAGGACAAGTGAAAAACCAGTCGAAGTTCCATCGTCTAATCCAATATCACCCAGTGTACCGTCGTATCTCAAGCAACAAGAAGAAGAACTGTGTTCATACAGCCCAGGATCTCCCATAAGTACCCCACCTGTGTTTGCAAGACCTCAACGAAAGGAAGAGGAGCAAACTCGTTCCTGGGATTTCTTGCAGAAGATGAGAGAAAGTTCTGAGCAAATTCAAAGGCCTCAAGACACATATTTGCCTCCTGTGGTGCAAGACCCTCCCATGTCGTACCAGTCCAATTATACATCAGTTTTACAGTCGAGTGTTTATAACCCATATGCTGAGATCCAACAAATGAAAGAATCTGGACAAGAATTTATCAAGCTGTTGAAGGAGGCCGAAACACTGGGATTCTCTCCAGAAGAATTGAACATAGCCTACAACCTCCATCAGGACGATGGTGAAAGTCCTATTTTGTGGCTAGAGAGCGAGTGGTTCGACCGCATACATCAAGTAATGAATGAATTTACAAAAATCTCCAAAGATGACAACATTGGAAATATCAGCCCAGAAGAGGCCAGAGAAGCATTAATAGAACACACTGGATGTGTGCAAGAGGCTTGTAAACAATGCGTCACAGATCGCAAGAAAAAGTTAAATGAAGTCATGGAATCAGGCATTTACGCCAGGACGGATATCATCAAAGCCTTAGATGACAATGATGGTGACGTCACAGAAGCCATTCAGCAGCTGCAAAGAATGACGTTTGAACCCATGCTGCAGAGAATCAAGGACAGCTGTATACCCGACGATGATGCTGTTGATAACAGACAATATATGGCTAGACAGACCAGTACTACTCAAGATGATGAGATATTTGAAGCCATTGTATCCAACAAAGACATTGACATGGATCGTCGAGTTCGCGTGATGTTTGCTGAACAAGGCTTCTTCTCGTGGGGTCGTGCATTGACGGCCATCAAACTTATTGACATGGAATTCACCGTGTCTAACTCTATCGAAGCAGCCAAAGTTAATGGTGACGTAGAAAGGTCAATCAAGTTTTTGCAACGAGAATGCATCTTATGCTTTGAGACAAAACCAGAGAGCCATATGGTAACCATGCTACACTGCCAGTGCCGCATCTGTACGCCATGTGTGACTGGTTTCTTTGAAAACTACATCCATGACCAGAATATCATGAAACTCGTCTGTCCTGCGTGCGATGAACCCAAGAACCTAGAGGACGATGCTGTTGCTAATGAGTACTTCAATAATCTGGACATTGTGATTCGTCGTTATGTCGACCCTGAAATACACGACTTATTTCAACGAAAGTTACGTGACCGAACGCTGATGAAGGAACCTAACTTCAGATGGTGCTCTCACTGGGAGGACCAACACGAAGGTATATCCTGTGAACGCTTCGCAGCCTGGAAGGAAGCCAACGATCCTGAGGCTCAAGCTAATGGCCTTGCAGCACATTTGAAGCAAAATGGCATCGAATGTGCAAACTGCAAGTTTCGTTATGACCTGGCTAAAGGAGGTTGTATGCATTTTAAGTGTGTACAGTGTAGCCACGAGTTTTGCAGCGGATGCTACAAGCCGTTCAGGCGTACTCAACATTGTCCTGAATCACCGAACTGCGCAGTGCGTGGTCTTCACGCCCATCATCCAAGGGACTGCCTCTTCTATCTTCGTGACAGAGATCCTGACGAGTTAAAAAAGCTTCTCGATGAGCACAATGTGGAGTACAATACTGAACCTCCACAAAGACAAGCCATAGGTGGTGATGACGATGAAGAGGTGCAAGGTGCTGCTGCTGCTGCAAACACTGGACGCTGTAAAGTCATGGAGCAGAAAGAAGGAGCTGGCTCAAAAGATGTCGAGTGTGGTTGGGAGACTGCTGATGGCTATGCTGGACTTTGTAGACTCCATTTTATTGAGTACCTTGTAGAGCGAATCAATTCAAGCCTGATTGATCCAGTGGGAATATTTACCACAGGCGGCTTACAAGCCGTGCTGAGAAGAAACGATTTAGAGCCACCAGCAAAAGCAGCTAGAGAGAAAGACGCTGATTACCATAACCGTATTGTACAGTACGTCCAGGAAAAGCTTCCTTTACCTAGAAAATCACCGAGAAGACGAGTCTTAGGCGAAGAAGAACAACAACAGCCTGTAATGCAAGTGAATGACGTTCGTGTTGTTGATCTTGAGCAAGAAGACGGGCCATATCTGGATCACTGGGAATATGATCATAATTCCATAGATTATGATTCTGACATCGGCTACGATAATGATTCAGATGCTGAGCATGAGTCATACAATGGATAG

Transcript

alvinactis_v1_g24466

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|NZF
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16678	HOIP-UBA	HOIP UBA domain pair	Family	Interproscan
PF18091	E3_UbLigase_RBR	E3 Ubiquitin Ligase RBR C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR026254	Family	E3 ubiquitin-protein ligase RNF31-like	Interproscan
IPR032065	Domain	E3 ubiquitin-protein ligase RNF31, UBA-like domain	Interproscan
IPR036339	Homologous_superfamily	PUB-like domain superfamily	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR041031	Domain	RNF31, C-terminal	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR047542	Domain	E3 ubiquitin-protein ligase RNF31-like, Rcat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16004	RING FINGER PROTEIN 31-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0036435	Molecular Function	K48-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071797	Cellular Component	LUBAC complex	Interproscan
GO:0097039	Biological Process	protein linear polyubiquitination	Interproscan
GO:1990450	Molecular Function	linear polyubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-