Gene detail

Detailed information of alvinactis_v1_g24441 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g24441	ENDO-1,4-BETA-GLUCANASE	chr_13	4423525	4426428	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g24441

ATGCTTTATTTGGCAACGGTTCTCGTGGCAGTGGTGTACATCCTCGAAGGGGTGCAGGGTGAGACGAGCATCCCAACACTTATAAGCGATCCTCAGACCTGGCCCAATGGCTTCAAGATGATGATAAACTTGCAACTACTTGAGAAAGTTAAAGGGGGATGGACTATGACACTTCGATTCTCAAAGTCAACACCGAATCTACAGATATGGAAAGCTTTGATCGTGTCTCATTCCACTGATGACAAAGTCTACGACTTAACCAACATGTCATGGAATAAATACTTCTCGAAGTGTGCAGTGTTTGAAGCGTATTTTATAGCAGATAAAGACTCTGGAACTGATGCCCCAACTGCCATTGTAGAATTCCACAGAAACAACGCTGATAATGTACACTTAGATCCATACGCCTGCGCATCAACACCACTACCAacaacgatgccaccgacaacattgccaccgacaacgTCATCTCCTGTGACAACAAAACCAAACACAATTTCAGAAGAGACATCCATTCCCATACTTGTAAGTAATCCTGATGAATGGCCCAATGGCTTTAAGATGAAGATTCGAGTGCAATTGCTTGACGACGTTATCGGAGGATGGACCATGACACTTAGGTTCTCCAAAGCAGCTCCTGGACTACAGATATGGAAAGCTTTGATCGTGTCTCATTCCCCTGATTACAAAGTCTACAACTTAACCAACATGTCATGGAATAAAGACTTCTCGAAGTGTGAAGTGTTTAAAGCGTATTTTACAGCAAAGAAAGACTCTGGAACAGATGCCCCGATTGCAATTGTAGAATTTCACAGAAACAACGCTGATAATATCGCCCAGGATCCAAACGCTTGCTCTacaacattgccaccgacaacattgccaccgacaacattgccaccgacaacattgccaccgacaacattgccaccgacaacattgccaccgacaacattgccaccgacaacattgccaccgacaacGTCATCTCCTGTGACAACACAACCAAAGACTCCTTCCTTACCAACGACAACAGACCAACCAACAACTCAGCTGAAAACTACCAAGAATCCTACTACTTCTGGTCACACTTCGACTCACATTGTCACAACCGAGATCCCAACTACAAACCCTGCCACCAATGCACCAACATCCCCTGTTACTACATCACCAGCTCCATACGACTACAGTCAAGTACTAAGCGATTCCATTCTGTTCTACGAAGCTCAACGATCTGGTAAGCTTCCCTCTACAAACAGAATCCCTTGGAGAGGAGACTCCGCTCTAAATGATAAAGGTGACAAGCCGGGAGAAGACTTAACTGGCGGCTGGTACGACGCTGGAGACTTCGTCAAGTTTGGATTTCCAATGGCCTCAAGTGTGACTGTGTTAGCATGGGGACTTGTTGAGTACAGAGATGCTTACATAGCAGCAGGAGAGTTGGATAATGCACTGGACTCCATCAAATGGGCCACAGATTACTTCATTAAGGCTCATACAGCGAAGTTTGATTTCTACGGTCAGGTTGGGAATGGTAAACTAGACCACGACTACTGGGGTCGTCCAGAGGACATGACAATGAACCGGCCCGCTTACAAAATCACCACAGGAAAACCGGGGTCAGACTTGGCAGCAGAAACAGCCGCTGCTTTGGCTGCCACATCTGTCGCCTTCAAACCAACCAACCCAGACTACGCCAACATATTGATAAAACATGCCGAGGAGTTGTACGAGTTTGCAGACAAGTACAGAGGGAAGTACAGTGACTCCATCACGGATGCTGCACTCTATTATAAATCATACAGTGGATATCAAGATGAACTGGTTTGGGGAGCCGCCTGGCTTTACAAGGCAACCAACAAATTAGAATATTTGAACAAGGCTGAGGCCTACTACCAACAGTTTGGCATGAGCGGCAAACCTTGGGCCTTCTCATGGGATGACAAGAAGGCTGGAGCACAGGTGTTACTGGCAGAGATCACAGGAAAGACCAGCTACAAAACAGATGTAGAAACATCCCTAGATAGTTGGTTGCCTGGCAAAGATGTAACATACACGCCCAAAGGACTTGCATGGCGCACCCAATGGGGCCCAAACCGCTATTCTGCCAACACAGCGTTCCTGGCACTCGTTGCTGCTGGCAACGGTATGAAGCCGAGCACCTACCGCGCGTTTGCCAGAAAACAGATTCACTACATGCTTGGAGACAGTGGTCGAAGTTTTGTCGTCGGATTTGGTACCAACCCTCCTCTCAGACCTCATCATTCTTCAAGTTCCTGCCCATCCAAACCAGCCTCATGCAATTGGGATGACTTCAATTCTGCCGGTCCAAATCCACAAACCCTGACTGGTGCACTGGTAGGAGGTCCTGCCAAGGACGACAGCTTTAAAGATGACAGGAAGGATTATATCCAGAACGAAGTGACCACTGACTACAACGCTGGATTCCAATCTGCTGTAGCAGGTCTCAAGCATGTCCATGATATGAAGAATAAACAATAA

Transcript

alvinactis_v1_g24441

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00759	Glyco_hydro_9	Glycosyl hydrolase family 9	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001701	Domain	Glycoside hydrolase family 9	Interproscan
IPR008928	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR008965	Homologous_superfamily	CBM2/CBM3, carbohydrate-binding domain superfamily	Interproscan
IPR012291	Homologous_superfamily	CBM2, carbohydrate-binding domain superfamily	Interproscan
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR018221	Active_site	Glycoside hydrolase family 9, His active site	Interproscan
IPR033126	Active_site	Glycosyl hydrolases family 9, Asp/Glu active sites	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22298	ENDO-1,4-BETA-GLUCANASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0030247	Molecular Function	polysaccharide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-