Gene detail

Detailed information of alvinactis_v1_g24258 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g24258	DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT	chr_13	1925558	1939497	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g24258

ATGGCGGCGGCGAATGTGTTGGATGTGCAAGACACTTGTGTTGATGAAAAACCTATGGATTTAGATGCAAACCAAGGAGAAGAAACCTTTTCTGATAGATCTATCGAATCGTTTATCGACGAAGAATTTTCCAATCTTTTTGACAGTGAATCATCAGATGTCGAGGAATCACTATTCGAAGTCGAAGAGGACACAACATGCTCGAATTCTTCCAAGATATTAGCTCAACAACTACAGAAATTAAATGATTCACATTGTGTTGATTCTGGCGAACCTTCACGACAAACGGATGTCAGCTTGGAAAGGAATGAAGCAGGCGAGAGTTGTTCTATTGCAACGAAAGAGGAATTAAAAAGAGAGGCAACTCAAATGGTCCAACACTGCGAGAAATGTAGTCGGTTGCAGTCCAACAATTCTAGTTCACTTGACTCTGGTATTGGAGATGGACACAGAGATGAAGCGTTCACAGATGTCAGAGAAGTGGTGGTGACAGATGACCAGATCGTTGATATTCTTGAAGAAATTGGAAACATTTGGAAAATCCTGGGTCCAATACTCAATATTAAGTCTGCAAAACTTAAAAACATTGACGCTGATTATCAACACAATGCCGATAAAGCCAGCTGTCTATTGACAGCATGGAAGGAGCAAGAAGGAAAGAGTGCAACTGTTGGGAATTTAGAATCGGCATTACTTCGCATTAAGAGAAAGGATATTGCTGACAAATTTTTAGAAATTGTAGGGATATCAAGCTGTGGAGTTCAACCAATTCAAGTGATTGACAAACCACTGAATCTTAACATTAAAGTTGGACTTTCTACAGAGTACACTGAGCCAGGCACCTCTATCCTATTATGCGAGGATGCTACTGGTAAAAAGTATCTGGTAAAGGAAATCACTGATGGTCAACATGACTGGAATATTGAAAAAATAGTGGATGATGAACAAATCTTAGAACGAATGATAGTGGCAGCAAGAAACTCCAGAAAAACCAAAGAAGAAAGAAGACAAGATAGCCTAAGACGTGTCTCTGCAGAATTGACACAACTAAGAGAGAGAATGAAGAAAGTACGACTTAAGAGTGAGGACAAAGATGAAACTGGCGAAGATAAAGATGTTACCAGACCTCAAAGTGATTACACCACTGCAAACATGAACAAAATAACACTAAATGAAGCACGGGAAATGCTTAAAATGTGTGTCGTTCAGAGCGAGAATTCCCAGATAATGTATAGAGTTCTAATTAAACTTATTGGAGAAGTGGGTCCACTGGAGGGGAATTCTAGATGTCTACGGCAACTGTCAGACTTCACCAACGAGCTTCGAGATCAAGAGAGAAAGTTGTATCCAAAGCTTGTATTGTTAGATGCTTTAAAAGACAACTTGGATGACAACCAGGTAGCCATATTGGGGAGGTTGCAAAAATGGCAGCAGACTCAGAACAAACAGGTTGATGGAATTGAGAAGTTAATAACAAGTCTGCTGGAACAAGGGAACATACGTTGGCATAGAAAAACATCAAATAGACGATCAGAACCAATATTCAACAAAATCATCAGTGGCAACCTTGGAGGACGAAGGCGTGCAAAGACAGATTCTTGTGAAAGTAAAAAGCAATTCCTCAGCAGCTTACAGGATGAAAGAAATGAAGAACGCAAGAAGCAGATTTCTTCTCCACTTTGTGCAAGGCAAATACAAAAAATTTCTGAAGGGTTTatgctgtgttcacagcgttttaccaaggtacaaatcagaaaactattgtttgttgagcagttttctgacttgtaccttggcaaatcacttgccgtctcaacacggcTGTTGTCAAATGCTACTGTTGTCATTGTTGGCCACGGTGAAAGATCAAACAGCAAAGGACACAAACACTACTGCGAATTCCGTGATTGCGACTGTGATCTTTGTGATATAGGACGAAAACAGCGCGAAGTTGCTAGAAAACAACGGCAGATCGACAGACATCAAATGAGGCAGCTTTATGCTGCAAAGTCAGCAACAAAGGCCAGTGGAATGAAAGTAGAGACGTCAGCGCAGACAGTGGTTTCCCCTCAGTTTGAACAGCAATCATCAGCCACACACCGCAGAAACGTCGAAAGTCCTAGGCTAGCAACTCCACCGAACGATCACAGCCCAGTGCATCATGTCAGCCCACTCATAGGAAGGCAGCTGAATGTTTCAGACAACAGTGCCTTTGTAAGGTTTTCACAACGGTCAGACTTGAAAGGACACAAATACCACTGTGAATACAGTGATTGCGAATGTGATCTTTGTGATCGAGGACGAGAAAGGCGCGAAGTCATGAGAAAACAAGTCAAGCTACGAAGACATCAAATGAGGCAGCTTTACGCTGCAAAGTCAGCAACAAAGGCCAGTGGAATGAAAGTAGAGACGTCAGCGCAGACAGAGGTTTCCCCTCAGTTTGAACAGCAATCATCAGGTGAAGTATAA

Transcript

alvinactis_v1_g24258

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	DM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF00751	DM	DM DNA binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR001275	Domain	DM DNA-binding domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR026607	Family	DMRT family	Interproscan
IPR036407	Homologous_superfamily	DM DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12322	DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007548	Biological Process	sex differentiation	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-