Gene detail

Detailed information of alvinactis_v1_g23284 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g23284	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	chr_12	12299844	12315071	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g23284

atgacaacggcactagtgccgtctatcacagttttacgcacggcaagtttactctctattatggcggctattgatcctgataggtttgctcaactagctgatgaagatataaatcaaattatagcagatgtacaacctgaaagaactcgtcgtcaaactcgttggggagtttctgtgatgaaagTTGCCAACAGCTCACTCAACGCTAAACTGAAGAGAATCAAAGAACAAGGTCAAAGCAAAGTACAACACCATCCATCTATTCAACCAGAAGACATCAAGAAATGTTATGAAAGCAGAATCTTCAGTGGAGATACACCCCTCTCACTTTTACGGAGAAAATCAAAGACAGTTGAAGAAAACCAGCTTTGTCATCCAAAAGACGCAAACAGCATTAGATTTAGCATTGAATATGTTAAAATGAGCGAAGGAGAGAAAACCAAAAACCATCCTGGCGGTCTCAGCGATAAAGCTGACGAAGGAGACGCCAAAATGTTTTCCACCGGTGAAAAAGATTGTCCAGTTGACTATCTAAAGCAATTATTGTCTGTCCTTAATCCAGAAGAAGAAGCGCTATTCCAACGACCAAAGAGAAATTTCAGTCCTACCGACAAAGTTTGGTACGAGAAAGCGCCCATTGGAGTCAACACATTAGGGAACATGATGAAGAATATTTCAACTGATGCACACTTAAACACAATTTACACAAACCACAGCGTAAGGTCGACTTCAGTCACTATGCTTGATCGAGCAGGAATACCAGTTCATCGCATAATGCAGATCTCTGGTCACCGCAACGAAGTGAGCGTCAGAGTATACAGCGAAAGGCAAACAATGGCACAACAAAAACAATGCTCTGACATACTTGTTGCCTCAACATCGACTACTCTGGCCAACAACAACCCTTTACACCAAGCTGAATCAAGTACATtcgccccgaatattacaagtccacaccctactacactcaatgttagtgaaaaacaaacgattcagctggtatgtactgctactggtaacccaacaccatcaattagctggaaaagaaatggtgtggttgtaggtagaggaagtccgtttaatatcacagccaaatcagaagatcataaacaatgctacacgtgtgttgcttctaatagaatgacttgtgagaataccggcaatgtttgtctagctgtaaaattcgctccaaatattacaagtccacaccctactacactcaatgttagtgaaaaacaaacggtttcactggtgtgtactgctactggcaacccaacaccatcaattaactggacaagaaatggtgtgctggtaggtagaggaagtccgtttaatatcacagccaaaccagaagatcataaccaatgctacacgtgtgttgcttataatggaatgcctgatgcgaagaatgccagtgtttgtctagctgtaaaattcgctccaattattacaagtccacaccctactacactcaatgttagtgaaaaacatacggcaacgctggtatgtactgctactggcaacccaacaccttcaattaactggacaagaaatggtgtgctggtaggtagaggaagtccatttaatatcacagccacaccagaagatcataaacaatgctacacgtgtgttgcttataatggcatgcctgatgcgaagaatgccagtgtttgtctagctgtacaattcgctccaattattacaagtccacaccctactacactcaatgttagtgaaaaacatacggcaacgctggtatgtactgctactggcaacccaacaccttcaattaactggacaagaaatggtgtgctggtaggtagaggaagtccatttaatatcaaagccacaccagaagatcataaacaatgctacacgtgtgttgcttataatggcatgcctgatgcgaagaatgccagtgtttgtctagctgtacaattcgctccaattattacaagtccacacactactacactcaatgttagtgaaaaacaaacggctcaactggtatgtactgctattgggaacccaacaccatcaattaactggacaagaaatggtgtggtggtaggtagaggaagtccatttaatatcacagccaaaccagaagatcggcataaccaactatgctacacgtgtgttgcttataatggaatgcctgatgtgaagactgccagtgtttgtctagctgtacaatTGAATTATGCTGATGACAACAGCCTGGTGCATAGCGTTACATcaagagaccatgagggacagagagggagtcttccagtatag

Transcript

alvinactis_v1_g23284

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00589	Phage_integrase	Phage integrase family	Family	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002104	Domain	Integrase, catalytic domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-