Gene detail

Detailed information of alvinactis_v1_g23075 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g23075	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	chr_12	8541803	8561977	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g23075

ATGGTAGAATATAGCGGTTATGGCGAGTGTTCGTATCAAGGACCGTTCTTCAGAGCGCAAGAGACTTGGCGCCAAAACAGTACTGATGGTACTACCCCACGGGATACGTGGAATAACGTTAATCTTCATTCATTGGAGACTATTGAAAGCAAGACCAGAAACTCGACCAGCGAACAGCTAACTCTCGCTGTCATGGCCGGGTCTAAAGGCAAGATAAAAGTAGAGCTTGAGAATGACAATCTATGGCACGTATTCCGCGAGAAGGACACTGAAATGATTATCACTCGAGCGGGAAGTTTTGCTTTGACGTATGTTCCTGTTCTCGATTTCCGTGTGACTGGCCTCGAGCCACACGACTACTACAGCTGTATGGTCCAGATCGTCAGTGCCGACAGTAATCGATATCGCTTCGATGTCAACAGCGAGAAATGGGTCATATCAGGCTCGGCTACCCAGCAGGACCATGAGCATTGCAGTTCTATACACCCACATGGAACAGCGCTGGGAAAGGTATGGCTGAAGGAAGGAGCAAAGTTTGATAAGATTAAGCTCTCCAATCACTACAAGCAGTTTAGTGACTTTATTATATTGACATCGCTGCAGAAGTACAAAGCGCAGTTGATTATCACTAAGCTCGGCGTGCCGCAGTGCGAGAGGTGGATCTTTGATTTCCCTGGGACAGACTTCATCGCAGTCACGTGTTATCAAAACCCCGATATCACCAAGCTGAAGATCGACTATAACCCTTTTGCTAAGGCGTTTAGACAAGGGAAAAGGCCAGCAAAGCAGCCTACCCCAAAGAACCAAGCGACAGCTTCTTCTCAAAAATCAGCAAAACGTCCTCGCCTTCAGCTGTCATCACCTCCACCAGTGACAAGACTCCACCCACCACCCCTGGGGCACTTTCCTGACGTTATGCAACGAAGAACACCAACACCGCCACCTCCTCATCCACCGTTGAATTTGTACTGCCAGTCCCTACCCCCACGGGATGTATTACTTAGTCAGGAAGAGCTAGCGATGCAGGCTGGTTCCAGGTGCATCCCAGCAGTGAACGACCCGATACCATGGGAACCACCTCAACCAATGACGTCACAAAGAACATGCCTTCCACCAATCAGCACCAGCTTCCGGTTCGACGCTCCACCGCAATATTTCAAGCCAGAACCGCAGAATTACTGCCCTGGATGGCACCACGACTACCAAGACATGTGTAACAATCATTttgctactgctgatgctAGACTGTCATTGATCCATGGTTGTTTAACTGTATGTAAACATGCAGGAATAGAATTATCCCCACAGTGTGTTCCCATGCAGTCTGGCCTTGCAGCATCAGTAATCAGTTCTAGAAGTCATGGGTATAAATCCTATCAGAAAACCACCACAGAAGAACAACTAAAGCAACCACCAAAATTCAACTTTACAGAATTTTTCAAATTATTACTACCTGATATATGGCTCTTGTTGCTCGCAAGTCTGAGTGCCTTTGCTGTTGCCATGACGAACATCCACTTGCCGTTGTTGCTAGGCAACCTTGTTAATGTGGTGTCAAATTTAGCAGCAGAGGACCATACAAGGGATTATTTTGACGTCCTCAGAAAACCAATATTACAGTTGGTAGGACTGTACACTGCGCAGGCAGGCTTAACTTTTGTTTATATCACAGTTTTATCTTGTCTTGGGGAGCGTTTGGCCGAGCGAATGAGAACTGCGCTGTTTTCAGCTCTGATACGACAAGACATTGCTTTCTTTGATGCGCATAAAACTGGAGAActgatcaacagGTTAACGACTGATGTCCAGGATTTTAAAAGCTCCTTTAAACAGTGCATCTCACAAGGCCTCAAGAGCACAACCCAAGTAGTGGGCTGCATCTTTACCATGTATTACATGTCGCCTAAGCTAACCGGTCTCATGGTGTTAATCATCCCAACCGTGGTAGTATTTGGCACGCTCTTTGGTTCATTGCTGCGTCGACTGTCAAGAAAAGCCCAAGAGCAGGTTGCTAAGGCAACGGGTGTGGCTGATGAAGCTTTGGGGAATGTGCGCACTGTGAGAGCATTTGCAATGGAGGAGAAAGAAACTGACTTATACGCTCAGGAAGTTGGTAAATCCAAGACACTTAATGAATTACTGGGGTTTGGCATTGGAACATTTCAAGCTGGTGCTAACTTTGCCATTAATGGGCTTGTACTGGTTGTATTGTATGCTGGCGGCTCAATGTTAGCCATGAGAGAGCTACTACCTGGAGACTTAATGAGCTTTCTAGTAGCTACACAGACAATTCAAAGGTCTCTTGGAAGTATTTCTGTATTGTTTGGCCAAATCATCCGTGGCATGAGTGCCGGTGCTCGAATCTTCGAGTACCTTCTTATCCAGCCTACCATCCCAGTTACTGGTGGCAAGCAACTCGCACTCTCTGACATCAAAGGACAAGTTGAATTTGAGGATATCACATTTTTCTACCCAACACGACCAGGCCATAATGTTCTTAAACACTTCTCGTTGTCTATCGAGCTGGAACCAATTCTCTTTGCTACATCAATCATGGATAATATTAGATACGGAAGACCACATGCTACTGATAGTGAGGTTTATGAGGCTGCAAGGCTTTCTAATGCTGATGGTTTCATAAGACAGTTTCCACAGGGTTACGATACTGTTCTTGGTGAGAGAGGTGTAACGGTGTCTGGAGGACAAAGACAAAGGATTGCTATTGCCAGAGCTCTTCTCAAGAATCCAGCCATTCTTATATTAGATGAAGCAACAAGCGCTCTGGATGCAGAGTCTGAACGACTTGTACAACAGGCTTTGGATAGACTCACTGAAGactcagcacgatacaaGGCGCAGCTTGGAACTCATCAGCAGTTGATGAAAAAGAAAGGCTTGTATGCAGAGCTTGTGAGACGACAgatgcaggatgatgatgatgatgaAAACTAA

Transcript

alvinactis_v1_g23075

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	T-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR039421	Family	Type 1 protein exporter	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43394	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0015421	Molecular Function	ABC-type oligopeptide transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0090374	Biological Process	oligopeptide export from mitochondrion	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-