Gene detail

Detailed information of alvinactis_v1_g2284 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g2284	RNA-DEPENDENT RNA POLYMERASE	chr_1	37873443	37887828	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g2284

ATGGAATGGTTAGGCGAACAACAAGTTACTATTAAACACTTTCGTTCAGGTCGAACCAAGCTTCTCGTCTCAACCAGCGTACTAGAAGAAGGCCTAGATGTCCCGGTTTGTAACTTGGTAATTCGTTTCGATAGTTTGCCATCCTTGAGATCCCACGTGCAGTCACGTGGACGGGCATCCCGTCGTGCTAATAGCAAGTTTATCTTGGTGTTTAGTGAGTCAAAAAGACACACCGACGCGCTACTGGTTACGGAAAAGGAAAGGAACATGGAACAATCCATGAGGATTCTTCACAACACATCAGAGAGACAAATAACTCAGGCAATAAAGTTTGCATGTGAAGCACGAAAACCACTTCTTAACGTTCAAAGACAATCCGAACCAAAGCCTGTCAGGAGCGAACCCGAGCACCGCTATTCTCCTGCTACAACCCCCAGTGTTAAAGTGTCAGTGCACATACCAATAAAAACTGTGGGAATAACTGAGTTGCATTCAGCAATAAAGTTCTTTAGCGAGAATTTTAAAATCAAGGAAATGAACAATGCCAAAGAAGCTGGGAACCACACGCGTGCTTCACAATTCGACCTTGAACACGATGAACTCGAAAGCTCGCGTGAAGAATTTGTTGAACATATCACTCTCTCGTGGTGTGAACGTGGCAACAATGGCAATGCCGTTCTCTCTGAAACATGGCTGGAACACCTTGAGGGCACGAGAAGAAAACGAACTGTTGACGTCGATGTGCTTCCTGCAGAATCTTTCTCCATTGGATATTTTCGACGAAGAACGAGTTTCTGTCGACAGTGGCCCATACCACAAGGGCAGGAATTACGATCCATCCGTGTTGTATTCCAACATGATCTTAAAACTCTGTTGATCTTATTCACTGTGCATGAACCTCAGTCAACAGACTTGTATGAAATCGAGATACACTACAATGAACTACAGAGGTTTATTCTTGTAGACAGAAAGAGGGAATACTCTGATGTCTTTCTTTCATTGAAGCATTCGCCAAAGTTGTACAAATCTCCACAAGGAGCTTCCTGGGAGGCCATGGTAAACGAAGCGGAGGTGCAGgtggacgtcgacgtcgactctgactctgactctgactttgacgAAACACGAAGCAGCGACGGCGAACATCAAGTAGACGATGACCATTCCAGCGATGAAGACAGAGACAAAAGTGATGAAGGTTACGACAGTAATGTTCTACAAGACGAAAACATCATCCATACCGGAGAGAACAGTGAATCTGCCTTTTCTCATCCAATACTGGCAACCCTGGACGAGATAACAAAATGGTGTCGTGTTCCTGGAATCGCGGACAGCGAAGCATCCTTTGGGCGGTGTTTAAGTTATGTGTTGAGAGTTTCCAACACTGATCTTGGCGAACTGTTACCCAATTTAAGAAGCTGCGACAAGGATGTATATTTTGCAAAGCCTTCTACTCAGTGGTCAAACAAAACCGCTGCGTTGGCTGGTTTGGAAAAGCTCACTAAGATTGTCGAACAAGACTTCTTTTGCCAACCAGAAGAGACTCTCCACGAAATTCTTCAAACTCCAAATCTGAGGTCAAGACGCTTTACTGTCAAGCACATCCCGAGCCACTGTGCTCTAGTGAAACGTCTCGTCATGACTCCAACGCGTCGTCTTCAGCTGCGTAGCCACAGCTGCTGGTTTGTCAAGGCTTCAGCCAATCCTGATGATATTCGCAAATGGATGGGAGACTTTTCATCCATAAGATGCGTTGGGTCTTATGTATCACGCATGGGTCAGTGTTTCTCCACGTCACTAGATGCTGTAGGTGTCAGTATCGACCAAGGTGTCACGTGGTCTTCAGAACAAGATGTCAAGTACGACAAGTACTGCTTTTCTGATGGTGTTGGTCGCATTTCGCAAGACCTTGCCATTGAGGTTGTAAAGAAAATCGGCAAGAAATTCAACCCATCGGCATTCCAAATTCGTTTTGCTGGCTACAAAGGGGTATTAGCGGTCGACAGCTTGTTGTCAGGCAAGAAGGCATACTTTCGCCAAAGTATGCGGAAGTTTGAGTCAAGCCATCGTCGCTTGGAGGTCCTTGCTACTTCTCGTCCCCAAGCTGTTTACTTGAACCATCAGGTGATAATGCTATTATCTAACCTTGGTATCCCGGATGTAGTCTTTGTCAAACTGATGCGCGAAGCGTTAGATAATCTTACAGGTATGCTGCTAGACGAGCGTCGAGCTGTCCTACAACTTTATTCGTCGGTTAAAACAGGCATCGAATTCAAGAATCTTAGCGAAGCAGGCGTGTCCCTGACAGTTGAACCGTTCTTTCGATCCGTCATCGCTGCCGTTTATTATGATCATTTACATTCTCTGCTGACGAAAGCAAGAATCAAGCTTGATCCCAGGAAAGCCAGGCTGATGATGGGCGTTATGGATGAGACTGGGGTATTGCAGTATGGCCAGGTGTTCGTACAATACTCGGAATGTTCTAACGATCCCAAAACACACGAAGATTTCAACTTGAAAAAGAGGTCTGTTTTACAAGGGCCTGTGATGGTGACTAGAAATCCATGTTTACATCCGGGAGATATGAGACGGCTGGTTGCCGTGGATACGCCAGAGCTGAGACATCTTGTGGATTGCGTGGTGTTTCCTAGAGTAGGACCCAGACCCCACCCAAATGAGATGGCGGGCGGCGATCTCGACGGAGATTTATACTTTGTAAGCTGGCACCAGGACCTTCTCTCTGATCCAGAGAAAGAGCTGTTCGCGCCGATGGACTACGACGCTCCCCCGAAACAGGAAATATCACGTGATGTAACCCCAGCCGATATGACAGAGTTCCTGATGAACTACATACGAAGTGATCAATTGGGCATCATCGATAATGCACACAAGGCCCACGCAGACCTCGAAGCTCAAGGGATTGAGTCGAAAAAATGTTTGCTACTCGCTGAAGCTCATTCTCTGGCAGTAGATGCGCCCAAAACTGGCTGGTGGCCTGCCGTGTCATCACGTGACTTACAGGTAGTAAAGTGTCCTGACTTTATGATGAAGACCGATAAACCTAGTTACAAGTCAGGGAAGGTGCTCGGAAAGCTCTACCGTGCTTGCCGAGCCTTGAAACGAAACACCGAACAAAGCCCCGATATCAAACCACGATCAGTTATCGATTGTTCTTTTGCTGTCCCCGAGTACAAGATATTCTTAGAGAAAGCACGCTCGCAATACTCGAAGTATTCGGATAGCATTCAACAGCTAATGTCATCGTACGGAATTGCTTCGGAAGCCGAATTGATCTCGGGATGTTTCCGTAAGCTGTATAAACGCTTGAGCCGAGAAAGAACCGAAGTCGCGGAAATCGTAGGCAGATTAGTTGAAGACGTCAGAATGAAATTTAGAAAACGTTTCTTCAAGGAGTTTCTAATGGACGGCTCTCGTCACAAGCCACAGCAGTTGATTGACAGGAGGATTCACCAGAAGGCGTACGCTTGGTACTACGTGGCTTACGCCGAGGAGCCTGGTACCCATGGCGCGCGGTTCCTCAGCTTTCCTTGGATCGTTGATGACGTCATGGTGAGTATCAGAGCAGTAAAGAAGAGATCGACTCGCGATGTATCACTGACGTGTCCTCAGCCCAAGGTGAATGACGTAACGCAGAGTTTGATAACGTATCTTCGAGAAGACAAAGACAAGCTAATCACTGAGTACAAGCGACGATTAAGTGGAAGGAATCAGATCACCAGACAAATCAAGGGTCCCTGGCCAAACCTACAAATTGCTGCCTTTGGCTCCACAGCGACATTTCTGTTTCGAGAAGACTCTGATGTTGATTTGTGCTTCTTTTACAACGTACCAAGGCCTCAGATGACGAAAAAGGAACAGCTGAAGCTGCTTCGTAGCTTCAAGCCAGTGCTGTGTAAGCTATTTACAAACGTTCGTCTTGTTGACAGAGCTAAAGTACCGGTAATTTCGTGCAAGAAATTCAAGCCATATCAAGTCCCCGGCTTCTCTCTCGATGTCCCATTTGATGTAAGTGCGTCAAGGGATGGCTTGGACAAGGCTATCGTAGTATCCTGCTACATCATGTCCGACCCACCGCTGCTTGCTGTCATGCGTTTCCTAGTCTCGTGGGCTCACGTATCTGGACTAACTGGCCACGGCAAGCGAATGATTGCTAATAGCAACGCGTTGATCTTCATGTTCCTGAGTCACTGTGTAAACCAGGGTCACGTGCAGGAGTTAAGTGATGACGTCATTCAGAATTTCTACCGTCGACCATCCTACGATTGTCTGTCAGAGTGGGAAAATGTTTTGAACCGTGCAGTGGACCACACCCAGGGCACACCCAGTCTTCGTGGTACATCGTTAGGCGAGGTACTAATCCAGTTCTTCGCCAGTCACGTGTCCATAGTTGAGCTAAGAATACCTCACAGCATTAGTAAACTAGTGAAGGCCAAGACCATTGATGAGCTGTTGAACCCATCGTCTCTGACCCTGCTCCAGGAACACTTCCAGCGTGCTTATCACGTGATCGTCTTGTACGGTGACCTTGATTGTCTACTGCGCCTCAGTGGAGCCGAGAAGCGTCACGTGGTTCACCTATCGACAGGGCTGTCCAACGCCATGAAAGGAGCTGAGCGGGAAAATGCCCGCGGGATGCAGGAGCGGACGGGTGCTCAAGTTCGTATTCGAGCCAAAGGCTCAAGCGTGACGTATCGCTTGATTGTGGAGGCTAAAGGAACAGAGATTCAGATCGAGGCAGTGGATCAGATTCTCCAGGACATGACACGAACTACCAGCGCACTCAGGGCTGCCTTCATGTCCATGTGTTTTGTTAAAGGCGCCAGTCAAATTCTGTTTGAAAGTTCACGGAACAATAGTGAGGCAGTCACATTGGTTCCGTATCACTCCTATCACCATCCCCAGCATGATGGCACCCGTCTCTACACCCCTATGCTGGCCAGTAGATGGACCCTACGTGGACCCAGCCTCACCGTGTCAAACCACGTGTTCAACTCGTTCAAGCAGAAGTTCATCACTCAATTTAATCTAGCTGCGCGGGACCACGAAGAGTCATTACACGGTGTGATGGAGTTCGTTGTCCGCTTTGGACGCACTTACATCTTTAGGGTGCCAAAGTCGTTCATAGAGGACCCCGAGTCTGTGACCATTGAGAAGTTACAAGCAAATCTCAATCGAGGGTACAAAGCCACACAAACAAGGAAAGGTCGACCTCCTAAGCCTAACCTGGCTATCAGTGATTCTGGCGTGACGAGAAAAGCTAAACGATCTCGAAAGAAACGGCAAAAACAAGAAGATCCAAAGGTTAAGAAAGACAAGAAGATGAACGAAAAGCCTTGTCGTAGCTCGTACTTTACGAATATCAGATCAAAGAAGGCGGCTGAAACGTTCTTACAGACACAGTGCTTTACTGAGGTGGAGCGTTTTGAAGACTACGATGTTATCATCAAGGGCGATAATGAATTGTCAGTCAAATTTGACGAACAGTTACATTTCCAGGAGCTCCGCTTCACGCCCTTGCGATGGTGTCTGACCGACGTAAAACGGCGCTGGAAAGAGAAACAGAACGCCAAAGAAGCTGGAGAGGACGGAGACGAGATTGACATCAGATTCCTACTCCAGTCGCGCCGCTCTTTAACCAGGAACGAAATACTTGGCACTGAGTACGAAGTATACGAGGGCATTATGCAGCCAACGACACTTCACTCGAGATCAACCAAGAGACAGACGCAATTATTTCGCATCCAAGAAGACTTATGGCACCAGGTTTACATGGTACGACACAAGAAGACGCAGCGATTCCGTAACTTCTTCCCGTCCAACGACAAGTTCAATAAGTCACTGTTCATTGACCTCACTGAGGTAACCGAGTACTCACGGCCATTGTCGGATTGTTCTTCTTTTCGCAAGGTTTTTACTCGCCATGAAATGAATCTTCAGTTGGAGACTCCATCATTGTCAGCCGACGAACGGTCGTTGTCAGAATTTCTGTACTACGTTTGGCGACTTGCGTTTAACGTTTCTGACTTTCTCTCCATCTGA

Transcript

alvinactis_v1_g2284

Protein

alvinactis_v1_g2284

MEWLGEQQVTIKHFRSGRTKLLVSTSVLEEGLDVPVCNLVIRFDSLPSLRSHVQSRGRASRRANSKFILVFSESKRHTDALLVTEKERNMEQSMRILHNTSERQITQAIKFACEARKPLLNVQRQSEPKPVRSEPEHRYSPATTPSVKVSVHIPIKTVGITELHSAIKFFSENFKIKEMNNAKEAGNHTRASQFDLEHDELESSREEFVEHITLSWCERGNNGNAVLSETWLEHLEGTRRKRTVDVDVLPAESFSIGYFRRRTSFCRQWPIPQGQELRSIRVVFQHDLKTLLILFTVHEPQSTDLYEIEIHYNELQRFILVDRKREYSDVFLSLKHSPKLYKSPQGASWEAMVNEAEVQVDVDVDSDSDSDFDETRSSDGEHQVDDDHSSDEDRDKSDEGYDSNVLQDENIIHTGENSESAFSHPILATLDEITKWCRVPGIADSEASFGRCLSYVLRVSNTDLGELLPNLRSCDKDVYFAKPSTQWSNKTAALAGLEKLTKIVEQDFFCQPEETLHEILQTPNLRSRRFTVKHIPSHCALVKRLVMTPTRRLQLRSHSCWFVKASANPDDIRKWMGDFSSIRCVGSYVSRMGQCFSTSLDAVGVSIDQGVTWSSEQDVKYDKYCFSDGVGRISQDLAIEVVKKIGKKFNPSAFQIRFAGYKGVLAVDSLLSGKKAYFRQSMRKFESSHRRLEVLATSRPQAVYLNHQVIMLLSNLGIPDVVFVKLMREALDNLTGMLLDERRAVLQLYSSVKTGIEFKNLSEAGVSLTVEPFFRSVIAAVYYDHLHSLLTKARIKLDPRKARLMMGVMDETGVLQYGQVFVQYSECSNDPKTHEDFNLKKRSVLQGPVMVTRNPCLHPGDMRRLVAVDTPELRHLVDCVVFPRVGPRPHPNEMAGGDLDGDLYFVSWHQDLLSDPEKELFAPMDYDAPPKQEISRDVTPADMTEFLMNYIRSDQLGIIDNAHKAHADLEAQGIESKKCLLLAEAHSLAVDAPKTGWWPAVSSRDLQVVKCPDFMMKTDKPSYKSGKVLGKLYRACRALKRNTEQSPDIKPRSVIDCSFAVPEYKIFLEKARSQYSKYSDSIQQLMSSYGIASEAELISGCFRKLYKRLSRERTEVAEIVGRLVEDVRMKFRKRFFKEFLMDGSRHKPQQLIDRRIHQKAYAWYYVAYAEEPGTHGARFLSFPWIVDDVMVSIRAVKKRSTRDVSLTCPQPKVNDVTQSLITYLREDKDKLITEYKRRLSGRNQITRQIKGPWPNLQIAAFGSTATFLFREDSDVDLCFFYNVPRPQMTKKEQLKLLRSFKPVLCKLFTNVRLVDRAKVPVISCKKFKPYQVPGFSLDVPFDVSASRDGLDKAIVVSCYIMSDPPLLAVMRFLVSWAHVSGLTGHGKRMIANSNALIFMFLSHCVNQGHVQELSDDVIQNFYRRPSYDCLSEWENVLNRAVDHTQGTPSLRGTSLGEVLIQFFASHVSIVELRIPHSISKLVKAKTIDELLNPSSLTLLQEHFQRAYHVIVLYGDLDCLLRLSGAEKRHVVHLSTGLSNAMKGAERENARGMQERTGAQVRIRAKGSSVTYRLIVEAKGTEIQIEAVDQILQDMTRTTSALRAAFMSMCFVKGASQILFESSRNNSEAVTLVPYHSYHHPQHDGTRLYTPMLASRWTLRGPSLTVSNHVFNSFKQKFITQFNLAARDHEESLHGVMEFVVRFGRTYIFRVPKSFIEDPESVTIEKLQANLNRGYKATQTRKGRPPKPNLAISDSGVTRKAKRSRKKRQKQEDPKVKKDKKMNEKPCRSSYFTNIRSKKAAETFLQTQCFTEVERFEDYDVIIKGDNELSVKFDEQLHFQELRFTPLRWCLTDVKRRWKEKQNAKEAGEDGDEIDIRFLLQSRRSLTRNEILGTEYEVYEGIMQPTTLHSRSTKRQTQLFRIQEDLWHQVYMVRHKKTQRFRNFFPSNDKFNKSLFIDLTEVTEYSRPLSDCSSFRKVFTRHEMNLQLETPSLSADERSLSEFLYYVWRLAFNVSDFLSI*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF01909	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan
PF05183	RdRP	RNA dependent RNA polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002934	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR007855	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003968	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-