Gene detail

Detailed information of alvinactis_v1_g22637 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g22637	ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6	chr_12	1252819	1270127	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g22637

ATGGCTCCACGAAAGGGTCAAAAAACTGCAAAGCAGGAGGAAAATATTTCTCTTGGACCTCAGGTTGGTGAGGGAGAACTGGTGTTTGGCGTGGCCCATATTTTTGCTTCTTTCAACGATACATTTGTTCATGTGACTGATCTATCTGGAAGAGAGACTGTATCTCGTGTAACCGGTGGAATGAAGGTCAAAGCTGACAGAGATGAGGCCTCTCCCTACGCTGCTATGTTAGCTGCTCAGGATGTCGCAGTCAGGTGTAAGGAGATTGGTATCACTGCTCTGCACATCAAGCTCAGGGCCACTGGTGGAAACAAGACCAAAACTCCAGGACCTGGAGCACAGTCTGCTCTCCGTGCACTTGCTCGCTCAGGAATGAAGATTGGACGTATTGtggaaagcctatgcatgGAACCTTCACTCTTCACTGACTTCAGTGAGAGACGAAGGCACGAAGAGGGTACATGTAGTAACGTAGTCATGGACTTGTGGTTTGAATGGAGAGAAGAAAACAACGATGAGCGCTTCTCCTTCGAAGATAGTGACAGATTTGAAGAGGATTCATTATGCTCTTGGGCGTCAGAGCCAGAGAGTATTTGTGCAAATTGGCGGGGTTGGAAACGAAGCTCTCAAAACAGCGTTAGTTCCAGCTCAGACAACGTTGATAGTTTGATGGAATTATGTGCAAAAACAGTAGCCAACTACATTCCCTTTGAAGCTGTAGAGCAGACATATCCACAAATACCAGAACAGATACAGTTAAGAATAGCTTTTTGGTCCTTCCCTAAAGTTGAAGACGATATACGATTGTACTCGTGCCTTGCAAATGGCAGCCCTGATGAATTCCAACGAGGCGAACATCTCCTCAAAGCCAAGGCTGTTAGAGACGCTCTACAAATCGGTTTCCATTTAAGTGCAATGGTGAACCAACAACACAGTTCTGTCCTGTCTAAAGGCATGTTTAGTGTAGCGGTAACATTTGACAGAGGACACATCACGTCATGTAACTGCACATGTTATCCATCGGCAACATGGTGTGCTCATATCATTGCATTATGCCTACTTCGTATACATCATCCAGACCAAGTATGCTTAAGAGCACCAGTGTCTGAATACTTGTCTCGGTTACGACGAGATCAGTTGCAGAAATTTGCACAGTATTTGATTAGCGAACTACCCCAACAGATACTTCCCACAGCACAGAGGCTACTAGATGAGCTACTTTCCTCCCAGGAATCGGCTATCAACACAGTGTCTGGAGCCCCAGATCCGACTGCTGGACCTTCCATGACTGACCACAACAAATGGTGCTTGGATGAAAAAGCTCTGAGAGAAAATGTCCGCAAAATGTTGGTGAGGTTCTGTGGTCCTGTACCCCTGGTGTTTAATGACGTCAGTGGTGTATACATGTCTAATACTGCTCCCCCTACTGCCGCAGAATGGTCAAACCTGCTAAGACCATTAAAGGGTCGTGAACCAGAAGGCATGTGGAACCTACTCTACATTGTACGCGAACTATTCCACAGAAGAGACTCTAATGCCATCAATCTCCTCTCAACCCTGACTGAGGAGTGTCTGGCCAACGACCAGGTAGTCATATGGTGGTTCGATAGCCGCAGTCAGGCCTCAGGTTCCTCTGTTCATCGTAACCATGGTAATGGTTACCGTAACAACACCAATGCTGCAAGTACTGAGGCAACTAAGCATGCATGTGCTGGTTTTTGTGATGAGTTAGTTGTGTTATGGAGACTTGCTGCTCTGAATCCTAAACTCGACGACGAAGAAAGAGAAGACTCTAAGATATGGTTAAACCAGTGGCACCAAGACGCTGTAGATAAAGCTAGAGCAGGTCATGGGGCAGGATTCCAAGCTGCCGTCTCCTGCTTCCCTGGGTTTCATCCTGCAATAGAGGCGTGTTCACTTGCCTGGGGTAACGTCAATCTTTCCTCCGATACTGAAAAACCTGAAGGGGTCTTGGATGTCAGTTGTGTAGTTAATAAGAGTAAACATCCAGTTGATGTGTGTACAGTTCCAGTTGCTGCTGCCACATGTGCAGCAGAGGTAGAGGATGAGACAAGAAGTGTAGAGCCAGGCAGTGTGTTGCCACTGATCTGTGCTGTGACAGATTCTCATGAAGATGAGGAGAAATCACTCCAAGATAAACCAGTTTCCCTCCATGAAATCGAAGAAGACCTTGAAGTACTGTGTGCCAGGGCAGAAGCTCTCCATGTACATGGGTACTCAACAAAAGCTGGTAAGCTTTCTATACGGCTTGCAGAGCGAATCCTTGACAGTGAGACCCACCTAGATATGAGTACTGCTAAGAGCACTACTAAGAATACCAAGTCACTGTCGTTTAGTAGTACTACTCTAGTCAAGGCAGCATTCCTGTGTGGTGTGCTAGCAGAGGATCCACATTGCCATCACTTGGCTTTCAAAGTTGGGATGTTTGGTTTGGAAATGCCTAGACAACCCGCTAAAAGCAAAGCATTAGAGGTCAAGTTGGCACACCAGGAGACTGAGCTGGTTGCTTTACTGAGAAAACTCCCTCTTCGTGGAGAAGAGATGATGGTAGTCAGGGAGAAGGCCAACTTGATTTGGCAAGGAAAGCTTCAGCGTGGCGGTGCTGTTCTTCCTATTATGCTCGCTACGTTCATCTTTGAAGTACTGTGCTGCCCTGGTAATGCCAAGAAAAAGTCCAATAATGAACCAGAAAAGAAGGTTGACGAAGATATTGGATACAAGGCTGCATTCTGTGCCTTGGGTATGAGACCCAATATCCTAGAAACTGACTACCCTATACTATGTGAAGGTATAAGACGACAAAGAGGGGACCTAGCAATTGCCGTATTAGACTATTGCAAGGATAACCCCTCTAGGCTCAAGGCAGTAAAGGAGGTTCTTCTCGACAAGACACGTTACGAAGGACCAAGCTTCGTGAGTGAAGTTGAAAGACAAAATGACACAAGACAGAATGAGAACGAGAAGAAGAAGTCTGAAGACAATGTTAACGCGAGGAACCGAGGTGGTTTTGGTTTACCCCCTCGTCGTGGAAGTAACAGCCAAAGCTCCTCCAACACGAGTGATAGTGGCACAGACAATGGTAGTAGAGGGAGCTGTGGCGGCCAAAACCGTCCAAGAGGTCGACCTACTGGCGGCAAAACACAACCCAAGATTACTGTTACTGTGAACGAAGTGAGGAGAGAAGAAGAAAGTGGAAGCTCAAGTGGAGTGGACACTGATTCAGCTGTCAATCATCCTTCACCCAGTGTCACTGCTAAAGTAATGGGTGTCTGTCACGGAGATCCACGCAATACCACAAACGTCACTCGAGCAAGTAATTTCAGCGCGCAAGGCACATTGGGACCAAGGAACGGACCACGTGATGGGGAAACAAGGGACAGAAATCAGATGCCTTGTTCTCCTCGAAGGGGCCCCCAACAGGCCAACCCAAGGGCTACTTCAGATCTAGAAGGATCAGACATTGAAGATGGTAATGAAGAATTAGCTATCGAGTCAGGTGGCGTTGCACTTGCTCCAGATAACAGCAACATTAGCGTTAAATTAGTCCAGGAAATCGCTCTACCTTTGAACAGAAGCGAGTCTGGGAAGATTACTCGTAGAGACTCGGGCTCAAGCAGCTCAGAAGGAAGAGATGCAGGTGTACATGAAGACATTGAGGGAGGATCGCTCTCGGATTCCTCACCTGTGATTTTATCTCCCTCGTCATCATCAGCTAATGTTTCATCTGAAGGCTCGTCATGTTGCGATGCACCAAAATCCAAATCAACCGGTAGAGCACAAGGGAAGATGAAATCTAAAGTGGCTTCCAGTGACGTCACGTTTAAAACTGAAGGTTTACCAAGTGATCCCACACGCGTAAGTGACTCAGGTGTGAGGATATTGGGATTTCCAGTGACTTGTGCGCAGAATTCTGAATCCCTGGCTAAAGGTGCTGCGATGTCGGCTATTCAGAGTGATTCATCTAGGACATCTAAAGAATTCGAGTTACGTGGAGGggaattagaatcacttgatgaggaattagaatcacttgatgaagaattcgaatcacGTGGTAAAATATTCGAATCGCGTGATGAAGCTGTATCTCTTGTTGGGACATCCACCTCTCAAGATGGACTACCAATGGCAACACTTTCTTTGGTGTCACCAGGCCAGGCTGCTGCATCGAACGGTGGACCAGAAGATACATCTTCAGGATGTGTACAGGCAGCAGGAACAGTTGGAGAGGAACTGGAAgcagtggcaggcgcagcggacgtagcagaggcaggagcaagtgTAAACACAGACGACATTGACGCCAATCATCATGGCCGCAATAGGAGACAAGGAAACAAGAAGAGCCGTCGTAAGAAGAAAGGCAAGAACTCCGCCGTCAACCAAGCAACAGAAGCAGAAGCACACTTCATGTTTGAGCTTGCAAAGACGGTACTCACCAGAGCTGGTGGTATCAGCAGTACATCAGTATTCAGTCAGCCTGCAACTACCACAAGCCACGGTGGACCTCACAGAGGACTTCAACTATGCGCGTTTGAAATTGGTTTATTCGCGCTTGGGCTGCATAACCGCACGTCTGTCAACTGGCTTTCTCGGACCTACTCCTCTCACGTGTCGTGGATTTCAGGTCAAGCGATGGAAATAGGAAGCACTGCCATCCAGCTTCTTATAGAAAGATGGGAGAGTAATTTGACTCCATCGGAGGTAGCGTCTATAGCGGATAGAGCTTCAAGGTCAAATGATCCCACCATGGTCCGAGCTGCCGCAGAGCTTGGGCTGTCATGCTTGCATATGGCTCATACTCTAAACCCTGGTGAAATACAACGTGCTTTGTTACAATGCCGAGATGAGGACACGCAGCTTTTAGACAGGGCATGCCAGGCTGTGGAGAGTGCAGCTAGAGGTGGCGGGGTTTATCCTGAGGTCCTGTTTGACGTAGCTCGGCACTGGCATTACCTACACGAGCAAAGTCAAACCACAACTTCTAGGTCGCATAAAGACAACTCTCGTAATAGAGGTTCCCAGACTTCTCGAGCTCAACAACAACAACCTTCGGTTCCCTCGTCAACATCATCAGtcaacctctacctgcactcccatccactggatggacactccaccttcaactccgtcccacctccaccCTATCTGACGGCCGAGCAGTATGTACAGACACAGATGCATCATCAGGTACAACACCTGATGAACCAAGGATCATATAACAGTGGTACGTCCTACAGACCAAACAACCAAGCCAGTTATGGGTACTCGTTTAACTCCAGGCAACTCCACGCCAACCAGTTTCAGATATCAAGTTCCTACGGGGGTCTACCGCCACCTTACCAAACCTCGAACCCTGCAGTGTGTCAACTATCAAGCAGAGCGTTGAACCAACAACAAGGCGGACAAGTGTCGTATTACTTGAACAATGCGTACCGAGTAGGCATGCTCGCCCTTGAATCGCTCGCCCGAAGAACGCCCGACGATCGCCCGAATGTTAAATACTCTAGAAACCCACCCTGTAGCGACGATATTCGATGGTTGTGTTCGCTGTCGGCCAGGCTCGGAACGTCTTATCTACACCGATTTTGCGTGTCAGCGCTCAATGCTGTGGTGAGCCCGTTCGTCCTTCATGACCTTGCCCTCGAGGCAGCGCGCCATCTTGCTCGCTCTAATCCAGGCCAACTTGCAGTGAATCTGCGCTCGCCAAACATCAGTCCGTTGGTTCAGAAGAGTTTGTCGATGTACGGTCAGTGTATTCATCATAATCTTATGGTAATGGCGCAGTCTGATCATGAAGATTTTGTGGAGTTATTGCGACACGCAAGAGGTGCATTTTGTATGGTACCTGGTGGCATGTCCCAGTTTAACGAGCTGTTGCAAAGCATTAGAAGGCTGTATCCCAAGAAGAAGGATTTATGGCAGAAGATTATGACAGGACTGGCTAAAGCTTAA

Transcript

alvinactis_v1_g22637

Protein

alvinactis_v1_g22637

MAPRKGQKTAKQEENISLGPQVGEGELVFGVAHIFASFNDTFVHVTDLSGRETVSRVTGGMKVKADRDEASPYAAMLAAQDVAVRCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIVESLCMEPSLFTDFSERRRHEEGTCSNVVMDLWFEWREENNDERFSFEDSDRFEEDSLCSWASEPESICANWRGWKRSSQNSVSSSSDNVDSLMELCAKTVANYIPFEAVEQTYPQIPEQIQLRIAFWSFPKVEDDIRLYSCLANGSPDEFQRGEHLLKAKAVRDALQIGFHLSAMVNQQHSSVLSKGMFSVAVTFDRGHITSCNCTCYPSATWCAHIIALCLLRIHHPDQVCLRAPVSEYLSRLRRDQLQKFAQYLISELPQQILPTAQRLLDELLSSQESAINTVSGAPDPTAGPSMTDHNKWCLDEKALRENVRKMLVRFCGPVPLVFNDVSGVYMSNTAPPTAAEWSNLLRPLKGREPEGMWNLLYIVRELFHRRDSNAINLLSTLTEECLANDQVVIWWFDSRSQASGSSVHRNHGNGYRNNTNAASTEATKHACAGFCDELVVLWRLAALNPKLDDEEREDSKIWLNQWHQDAVDKARAGHGAGFQAAVSCFPGFHPAIEACSLAWGNVNLSSDTEKPEGVLDVSCVVNKSKHPVDVCTVPVAAATCAAEVEDETRSVEPGSVLPLICAVTDSHEDEEKSLQDKPVSLHEIEEDLEVLCARAEALHVHGYSTKAGKLSIRLAERILDSETHLDMSTAKSTTKNTKSLSFSSTTLVKAAFLCGVLAEDPHCHHLAFKVGMFGLEMPRQPAKSKALEVKLAHQETELVALLRKLPLRGEEMMVVREKANLIWQGKLQRGGAVLPIMLATFIFEVLCCPGNAKKKSNNEPEKKVDEDIGYKAAFCALGMRPNILETDYPILCEGIRRQRGDLAIAVLDYCKDNPSRLKAVKEVLLDKTRYEGPSFVSEVERQNDTRQNENEKKKSEDNVNARNRGGFGLPPRRGSNSQSSSNTSDSGTDNGSRGSCGGQNRPRGRPTGGKTQPKITVTVNEVRREEESGSSSGVDTDSAVNHPSPSVTAKVMGVCHGDPRNTTNVTRASNFSAQGTLGPRNGPRDGETRDRNQMPCSPRRGPQQANPRATSDLEGSDIEDGNEELAIESGGVALAPDNSNISVKLVQEIALPLNRSESGKITRRDSGSSSSEGRDAGVHEDIEGGSLSDSSPVILSPSSSSANVSSEGSSCCDAPKSKSTGRAQGKMKSKVASSDVTFKTEGLPSDPTRVSDSGVRILGFPVTCAQNSESLAKGAAMSAIQSDSSRTSKEFELRGGELESLDEELESLDEEFESRGKIFESRDEAVSLVGTSTSQDGLPMATLSLVSPGQAAASNGGPEDTSSGCVQAAGTVGEELEAVAGAADVAEAGASVNTDDIDANHHGRNRRQGNKKSRRKKKGKNSAVNQATEAEAHFMFELAKTVLTRAGGISSTSVFSQPATTTSHGGPHRGLQLCAFEIGLFALGLHNRTSVNWLSRTYSSHVSWISGQAMEIGSTAIQLLIERWESNLTPSEVASIADRASRSNDPTMVRAAAELGLSCLHMAHTLNPGEIQRALLQCRDEDTQLLDRACQAVESAARGGGVYPEVLFDVARHWHYLHEQSQTTTSRSHKDNSRNRGSQTSRAQQQQPSVPSSTSSVNLYLHSHPLDGHSTFNSVPPPPYLTAEQYVQTQMHHQVQHLMNQGSYNSGTSYRPNNQASYGYSFNSRQLHANQFQISSSYGGLPPPYQTSNPAVCQLSSRALNQQQGGQVSYYLNNAYRVGMLALESLARRTPDDRPNVKYSRNPPCSDDIRWLCSLSARLGTSYLHRFCVSALNAVVSPFVLHDLALEAARHLARSNPGQLAVNLRSPNISPLVQKSLSMYGQCIHHNLMVMAQSDHEDFVELLRHARGAFCMVPGGMSQFNELLQSIRRLYPKKKDLWQKIMTGLAKA*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00411	Ribosomal_S11	Ribosomal protein S11	Family	Interproscan
PF21055	ZSWIM4-8_C	ZSWIM4-8, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001971	Family	Small ribosomal subunit protein uS11	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR036967	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan
IPR048370	Domain	ZSWIM4-8, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22619	ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0031462	Cellular Component	Cul2-RING ubiquitin ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-