Gene detail

Detailed information of alvinactis_v1_g21916 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_11:16427817...16444172
NR annotation: XP_031562883.1, LOW QUALITY PROTEIN: DNA repair and recombination protein RAD54-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g21916

ATGCGGAGATCAAGCGCTCCTAGTCAGATCCTGAAGAGAAAACACACCGATCGTGATGGAGAGAGTCGAAATGGACGACAAAAACAGAAAATGAAACTCGATGCTGAACCCCCTTCAAACCAGTACATCTCTTCTTACAGAAAGCCCCTCACTCCTCTACCCAATGGAAATGAATATGTAGCCTCGAGAATGTCTGATCATGAGGCCATGATAAGAAGCATTCTCTCCAAGCCCTTCAAGATCCCAATGCCCAATTATGAAGGATCATCGTCAACTCGAGGTCTGGGGCTGAGAAGAAAGGGTCCCAGAAGGTCCCTGCATGATCCTTTTGAAGAAGATGCCCTGGTGTTACATGAACCACCCATTATGTCTGCCCATGAACAGCTGAATGTGGATCTAGAGAAACAGGAAGTCCATGTTGTAGTTGACCCTTTACTTGGGAAAAAGTTACGGCCACATCAAAGAGAGGGTGTCAAGTTTTTGTACGATTGTGTGACGGGCAAAAAGATTGAGGGGAGTCATGGCTGCATAATGGCTGATGAAATGGGTCTTGGTAAAACTCTTCAATGTATTGCACTTATCTGGACATTACTGAAACAAGGACCAAACGGTCAGCCTACTATCACCAAAGCTATCATTGTAGCACCCTCAAGTCTTGTCAGGAACTGGTATAATGAGTTATCTAAATGGTTGGGTAACAGAATCAGTGCTTTACCTATTGACTCTGGAAGTAAAGATGGGATTGACAAACAATTAATTAATTACATGGCTCAACAAGGCAGTCGTACGCCCACTCCAGTACTCATTATCTCATACGAGACATTCCGTCTGCATGCTGCACAACTACACAAGGGAAGTGTTGGGATGATCATATGTGATGAGGGTCACAGACTGAAGAATTTGGAAAGTCAGACGTATCAAGCACTTAACAAACTGAATACCAGTAGGCGAGTACTCTTATCAGGTACTCCTGTACAGAATGATTTGTTAGAATATTTTAGCCTGGTTCACTTTGTAAATAAAGGAATATTAGGTTCAGTATCAGAATTTAAAAGAAAATTTGAGACACCAATTTTAAGAGGAAGAGATGCTGATGCCTCTGATGCAGACCATCAGAAAGGCACAGAGAAACTTACAGAGCTGACATTATTGGTCAATAAATGCATCATAAGGAGAACAGCATCAATCCTGTCAAAATATCTGCCCATAAAAGTGGAGCAAGTTGTGTGCTGTATGCTAACGCCCCTGCAAACCCAACTTTACAAGCATCTAGTCAAATCAAACATAGCACGCAGACTGTTACAGAGTGAATCAAAAACTAGTGGTGCAGCTGCATCATCACTTGGATTCATTACAAGCCTCAAAAAACTCTGTAATCATCCTGAGCTGATATTTGAAAAGGCACAAAAGAAAGAAGATGGTTTTCAAGGAGCACTAGATATTTTTCCTGAAAAGTTTAACCTTAAAAATTTACTTCCTGATCTATCAGGCAAAATGCAAGTTCTAGACCTCATCCTTGCCATTACTAAGTCTACTACTACTGACAAAGTTGTTCTCGTGTCAAACTACACACAGACACTAGACATTTTTGAGAAGCTGTGTAGACAAAGAAGATACCAGTATGTTCGTCTTGATGGAACCATGTCAATCAAGAAGAGACAAAAGATAGTTGACAGCTTTAATGATCCTAAGGGCAGTGATTTTATCTTCATGCTGAGCAGTAAAGCAGGAGGGTGTGGACTAAACTTGATTGGTGCTAATAGACTAGTGATGTTTGATCCTGACTGGAACCCAGCCAATGATGATCAGGCTATGGCTAGAGTATGGAGAGATGGACAGAAAAAGAAGGTCTACATTTACAGACTACTATCAACTGGCACCATTGAAGAAAAGATATTTCAACGACAAGCCCACAAGAAGGCACTGAGCAGCTGTGTTGTAGATGAACAAGAGGATGTAGAGAAACATTTCTCACTGGAACAGTTACGAGACTTGTTTCGATTGAATGAAGAAACATTAAGCGACACTCATGACAAGTTCAAATGCCGCCGATGTGTAAACAACATTCAAGTACACCCTCCCTCTGATACTTCCACTTGTGGTTCAAATCTAGCTCAATGGAATCACTGTGCAAGCAGTAAAGGACTGGACGATGTCATACTAAAAGAAATCTGGAAGTGTGGAATCAGCTTTGTATTCCATCAAAAATCCCATAATGAACAACTAGGGGTTTAA

Transcript

alvinactis_v1_g21916

Protein

Uniprot

Uniprot term	Description
F1Q8K0	DNA repair and recombination protein RAD54-like OS=Danio rerio OX=7955 GN=rad54l PE=1 SV=1
O12944	DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus OX=9031 GN=RAD54L PE=2 SV=1
Q92698	DNA repair and recombination protein RAD54-like OS=Homo sapiens OX=9606 GN=RAD54L PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF08658	Rad54_N	Rad54 N terminal	Family	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR013967	Domain	Rad54, N-terminal	Interproscan
IPR050496	Family	SNF2/RAD54 Helicase and DNA Repair	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45629	SNF2/RAD54 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016817	Molecular Function	hydrolase activity, acting on acid anhydrides	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007131	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0015616	Molecular Function	DNA translocase activity	Interproscan
GO:0045003	Biological Process	double-strand break repair via synthesis-dependent strand annealing	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10875	RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein	EC:5.6.2.-	DNA repair and recombination proteins	ko03400	deepkoala