Gene detail

Detailed information of alvinactis_v1_g21655 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g21655	ZINC FINGER AND SCAN DOMAIN-CONTAINING	chr_11	11784600	11805735	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g21655

ATGAGGGTAGACACGAAGATCTTGCTGGCTCTTTTGTCTTTTGAAATCATCACGATTAGCAGTATTTCAGGATTACAGATTGTCCCGCCTTACCCACCCAACTCTATAGTCCTTGAAGGAGAATCGCTGACCATACCATGCTCAGCTGCAGACCCCACTGGATACCCAAGTAAAGTTACCTTCAAGACGAAAAGTGCGGACGGTTCTACGTACGAAGAGATCAAGACGAGTGAACGAGTTTCTATCACTAACTCTACCCGTAATGATACCGTTCAAGGTGTACTGACGAGAACAGCAGTTCTGCATATAACAAACACGCGATTCCCAGATGATGGAGACTCACAAGGAATGTCATACAAGTGTTCGTCAACCCTGGGACGCAACACAAAGGAACTTACGTTTATGGTATATCTTGTGAAAAAAGTCGACCTACCCAGAGCGGTTGTCAAAGGTACAACTGCAACTTACGGAGGGTCAGCCAACCTCACGTGTGACGTCACCTATCGGGGAAATCCCAACACAGTTCAACTTAAAAGAGTCCTATGGATGAGGAACTTTAATATCACTGGTCAAGGTGCTGTTGACATAGCTCCCATTATAGTCACCAAGGCAACCACACGTGATGGTGGGGACTATGTATGTGCAGCTGAGGTGAATCTCATGGCAACAAGACTGAAACAGATCACCATGGGAACCGCGACACTCAACGTCAAAGTCAAGATGTTCAACGGAACCACACAAGTAATAGGAAAAATATCTGGTAGCGTGGTAATGGAATGCCCAGCTGAAGGCTACCCACTGAATGTCACATGGCTAAGAGTGAATAACAATGGGCAAGAAGTGAGACTAAGTGACGTTCCAAGAATCAGAGATCGATATGTTGTTACCAGGCCCTGCCCGTCATGTCGTTATAGAATGACGATCTATAAGTTGCAGTCACGTGACCAGGGTCACTACGTTTGTAAAGCTAGTAGCAACATGGCGTCAGCACGGCACCACTGTGAGCTGATATTCCCAGAGAgtaaagtaaccgtcaagcctaccttagctactggtaatgtaaccgtcaagcctaccttagctaaggAACCCATACCAAAGCCAAGTAGTCGGCTACCTCTGGTTATGTATATCATACTTGGAATAGTATTAAGTCTGTCGCTGCTTCTAAATGGCTTCCTATTTTACAAGCTTCGAAGGAACAAGCAACTGTCACAGAAATCTACACTGAGTAGTGACGTCAAACCAACAGGCCAACCTGAAGACCCACGTGATTCTGCTGAGATAATAAGTGAGCCCGCAGTACCAACTGGTGACGAAAATTCAACCACTATCGAACTACAGCCGAATGCTGATCACGTGACCAATCAATCTGCAGAGGAGACTGAAGACCACCCTGAACCCAGTGATACCACAATGATGATACAAGAGAGTGAGGGGATTGCAACTGACATTGAACTTCAGCCAATCGTTGATGAATCTGAAAAGGAACAAAATGACCCgtttttttactccattgttggagatttctacaatttctacatgcacctaaataattatcgagtcaagaaaaccatggagtcatcaatactgggtacagattggatggagtattattgtaagtcaggagagctgctgttctactataacaaggtgacagcagaacacacatggccgaacatctcaaatagctttgaaaatggaactgctatctacggacggccactactctgtgtggggacacagacagaggattatggttgtagtaatggatgtacgtctgaacacatagatggtggtttgatgcagccaaacaatgtcacaacagaaactcaatcagagaataatgcagataatatgaatacctccacttgtttgatgagccaagttgataatttccatgataagaaggaatactctatgaaaggtttgctgtccaaaatatgtgaagagataccgacattgcatacggatgagagtgaagaattcaatggtgacagtgtaatccatggaatgatgggcagccctcaagcttcttctatacaacacgagcgtgatcaaaatgatcacatggacactgatactgtgtgtgatagtagtccaaccttgaatggaaggcttgagaaatccactgaatcctttactgttccttcagttgatggtaccattgtagaagatgaaagctgtatggacgaggtttcccaagatttatcacaatccttcaaccctgaccgcaatagtgacgatgcagtttcagatgacattcctaagactatggaccagggattgaagtgtaaaacatgtagtaaggcattttcatgtcaagaacgtctcagaagtcacgagcggattcatactggaaataaaccataccaatgtaaaacctgtactaaggcatttatatggcaaggtgacctcaccattcatgagcggattcatactgggaataaaccatatcaatgtaaaacctgtggtaaggcatttgcatatcaaagtcacttcagccgtcatgagcagattcataccgggaataaaccataccaatgtaaaacctgtactaaagcatttgcccaacacagtgacctcgccgttcatgagcgaattcataccgggaataaaccattccaatgtaaaacctgtggtaaggcatttgcacaacgaagtagtctcaactatcacgtgcggagtcataccgggaataaaccataccaatgtaaaacctgtactaaagcatttgccaaacacagtgacctcgccgttcatgagcggattcataccgggaataaaccattccaatgtaaaacctgtggtaaggcattttcacatccaagtaacctcagcagtcatgtgcggattcataccgggaataaaccatctcaatgtaaaacctgtggtaaaacatttatacgtcaggaccgtctacggattcatgaacgcattcattctggtgtgaaaccttgtaaagctaagaagtga

Transcript

alvinactis_v1_g21655

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23226	ZINC FINGER AND SCAN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-