Gene detail

Detailed information of alvinactis_v1_g20947 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g20947	NUCLEAR FACTOR I	chr_11	453389	467353	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g20947

ATGATGCTCCGTGGAAatcatgatgatgatgatgatataattggtgaagatgctggaaatgatgttgatggcgTGACAAGAGTGAACGAAGTAAACAGACTGCGTCAATTACAGAAAAAAGTAGTTCGCATTGTACTGCAACATACGAAATGGATCAGATCTAGGACAGCATCGGAGCGCGAAACAGCTACCGCGATGGTGCTTAGCGCTGACCATACCTCGACTGCAGACTACTTCGAAATGGCTAACCCAGGCATTTTTGATCAACAGGATGAAATCCATTCGTTCATCGAATCTCTACTGCCCCATGTCAAGGCCTTTGCATATACTTGGTTCAACCTGCAAGCTAGAAAGCGAAAGCATTACAAGAAGCACGAAGTGCGGATGACACCGGCCGAGGAAAAGCGTTGCAAGGAGGAATTAGACGCTGAAGCGCCAGAAATTAAGACTAAATGGGCATCAAGGCTACTTGGCAAACTACGAAAGGACATCAACGATGAATGTCGTGAGGAGTTCGTCACGGCGATCGCAGGAGCGAAGCCGGGCTCGAGTTGTCGTTGCGTTATATCAAAACATGACCAAAAAGGCAAGATGCGTCGAATAGACTGCCTTCGCCAGGCTGATAAGGTCTGGCGGTTGGACCTAGTCATGGTGATTTTATTCCGGGGAATTCCATTAGAGAGTACTGACGGCGAACGACTCGGCAAATCGGAACATTGTCACCATTCTGGGCTGTGCGTTCTGCCTAACCATATCACAGTGACTGTCAGAGAACTGGACTTGTATCTTACAAATTTCATGTGCACAAGAGACCATAAGGAGGATTCCGACACTCAAAATAGCGCCCCTAACTCGCCCGCAGACCAGCAAGCTCGTATTCAAAGATTGTCTCGAGACAACAATCTTGTCCTTTCTGGAGTTTTTACAGTCACAGAACTCTACAGGTGCTCAAAAACTCCTATACGCTATAGTGGCAGTCAAGGCTTAGTGTTGTCTGGGTTTGACAGCCCGCCGTATATGCCTGAAACAAGCCTTGAGCAACGATTTCCACAAGCCCTGAATATTCAACAAAGGACGGACCCTCACGAGTTGCGTTACCGAAAGAAAAGCAGAAGATTTAATTCTATATCATCAGTAGATGATGACTTGATTGATGATGATTATGTCAGTTCACCCTCTGGATTCTCACCTCAAAACAGTGGATGGCCTAGTGATATGGATGCAGGTGTGGTACAATCTCCCGTCATACCTTTTCCAGTCAAAATAAAACCAGAACAGAACTGTGGTTACAGCATGATGGAGCAACAGTCTAATGTACAATGTTGTGGTATCAACGAACCCCAATCTCCTTCCATCAATAGCTACAATACACAGCCACAGCAAGGGCAACCAAGACCTGTTATGTCACCAGACTACAACAATAACATGACTGATGCTTACCTCCAGGCGATGACTGGACAAAAAAGCCTAGGAATGAATGCTGGAATGGGACCAATGCATGCACAGCAACAGGGATTCCAGTTTAGAATACCAACAGGACCTATGCCAACAATTGGTTCAGCTCCAAGTCGTACAGGGTCAATAACTGCAGAGTATGCCCAGTACTTGGATAGACCTCGCTCAAGCTCTGTACCAACACCCCGTCAAATGGGCATGGGTCCTTCTGCAGTCATCCCTCCGTCGTCCTTAAGTAGGTCACAAAGCCATGCTGCTGTGGTGAATGGAACTGGCAGTAGCAGTAGTATAGGGAGTACAGACCAGTCTGCACCATCCCCTACTAGACAATCACCTACATGTATACCCACCAGCCCAGCAAGTAGAAGTCCACCATCTGCTATTACTCTAAAAACTACTCTACAAATAATACAGGCTGCCGTCAGTAATTCTCAAAGCATGACACCTACACTAAGTAACCAGTCACAAGTCTTCACATATGGTAACTTCAATGCATCTCAAATGCCAACAAGCATGAGCCCAAATATGCCAATGGGTATGTCTCACAGATATCGCCTACCGACCCCACCCCCACAGATGACATCTGCGCCCAATCCTGGTGATGATGACAGTGGGGATTACCAGCAGATTGTACAAACATTGAACGGCATAGCTTCTGATGTTACAATGCTTGAAAGTAAGACATTGTAG

Transcript

alvinactis_v1_g20947

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	CTF_NFI

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00859	CTF_NFI	CTF/NF-I family transcription modulation region	Family	Interproscan
PF10524	NfI_DNAbd_pre-N	Nuclear factor I protein pre-N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000647	Family	CTF transcription factor/nuclear factor 1	Interproscan
IPR003619	Domain	MAD homology 1, Dwarfin-type	Interproscan
IPR019548	Domain	CTF transcription factor/nuclear factor 1, N-terminal	Interproscan
IPR020604	Domain	CTF transcription factor/nuclear factor 1, DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11492	NUCLEAR FACTOR I	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-