Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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Genomic Location: chr_10:23040262...23041883
NR annotation: XP_031569871.1, rhombotin-1-like [Actinia tenebrosa]
| CDS | |
| alvinactis_v1_g20768 | |
| Transcript |
| alvinactis_v1_g20768 |
| Protein |
| alvinactis_v1_g20768 |
| Uniprot term | Description |
|---|---|
| Q0P5B3 | Rhombotin-1 OS=Bos taurus OX=9913 GN=LMO1 PE=2 SV=1 |
| Q924W9 | Rhombotin-1 OS=Mus musculus OX=10090 GN=Lmo1 PE=2 SV=1 |
| Q8JFQ2 | Rhombotin-1 OS=Danio rerio OX=7955 GN=lmo1 PE=2 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00412 | LIM | LIM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001781 | Domain | Zinc finger, LIM-type | Interproscan |
| IPR050945 | Family | LMO/RBTN Transcription Factors | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45787 | LD11652P | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003713 | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0045944 | Biological Process | positive regulation of transcription by RNA polymerase II | Interproscan |
| GO:0140297 | Molecular Function | DNA-binding transcription factor binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K24098 | LMO1_3; rhombotin-1/3 | - | Domain-containing proteins not elsewhere classified | ko04990 | deepkoala |