Detailed information of alvinactis_v1_g20162 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_10:14523014...14527466
NR annotation: XP_020910220.1, uncharacterized protein LOC110248067 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P46850RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX=83333 GN=rtcB PE=1 SV=3
P0DX92RNA-splicing ligase RtcB1 OS=Escherichia coli (strain ATCC 25922 / DSM 1103 / LMG 8223 / NCIMB 12210 / NCTC 12241 / WDCM 00013 / Seattle 1946) OX=1322345 GN=rtcB1 PE=1 SV=1
Q74MJ0tRNA-splicing ligase RtcB OS=Nanoarchaeum equitans (strain Kin4-M) OX=228908 GN=rtcB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01139RtcBtRNA-splicing ligase RtcBFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001233FamilyRNA-splicing ligase, RtcBInterproscan
IPR052915FamilyRNA-splicing ligase RtcB-likeInterproscan
IPR036025Homologous_superfamilytRNA-splicing ligase RtcB-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43749RNA-SPLICING LIGASE RTCBInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006396Biological ProcessRNA processingInterproscan
GO:0008452Molecular FunctionRNA ligase activityInterproscan
GO:0003909Molecular FunctionDNA ligase activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0030145Molecular Functionmanganese ion bindingInterproscan
GO:0042245Biological ProcessRNA repairInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14415RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase)EC:6.5.1.8
Transfer RNA biogenesisko03016deepkoala

TOP