Detailed information of alvinactis_v1_g19968 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_10:11399368...11419388
NR annotation: KXJ21005.1, Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9FGH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana OX=3702 GN=LSH5 PE=1 SV=1
Q9LMK2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1
Q9LW68Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00589Phage_integrasePhage integrase familyFamilyInterproscan
PF00931NB-ARCNB-ARC domainDomainInterproscan
PF04852ALOG_domALOG domainDomainInterproscan
PF13374TPR_10Tetratricopeptide repeatRepeatInterproscan
PF13424TPR_12Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR002104DomainIntegrase, catalytic domainInterproscan
IPR002182DomainNB-ARCInterproscan
IPR011010Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan
IPR006936DomainALOG domainInterproscan
IPR013762Homologous_superfamilyIntegrase-like, catalytic domain superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR051787FamilyEffector and Ciliary Development-Associated ProteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45641TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0043531Molecular FunctionADP bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan

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