Gene detail

Detailed information of alvinactis_v1_g19374 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g19374	TNFR-CYS DOMAIN-CONTAINING PROTEIN	chr_10	3693667	3731494	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g19374

ATGCCGTGGACTGAAATTCAAAGGAGTCGGCTTGAGTTAGAGAAAGCAATTCTAGAGAACCATTTCCCAGGCAGAATTACATGGATTAGTCATCAAACTCCTGCTGAAGCCAAAGTTGCAGTGGCCATGAACACCAATAATGATAAACAGTACACACATATTTATCTTGCAAAGGATTTCCCAAACTCCTGTCCCGACTTGGTTGTAAGCAGTACTAGTCACCCACTGAGGAAGTCAAATGGCAGAAACCTCGATTATAATGATCACAGTTATGGCACCACCAAGGACAATCTCACAAAGATCTGCCATTTCAGACCGAATCTTTGGACAGACGATAATACACTGTATCAAGTGTTTATGAAAGGTCGCTTATGGCTGGAGGCCTACGAACTTCATCACCAGACAGGAAAACCGATGGGAAAGTACTTGAGAGAAATGCCTGGGTGGATGGGTGATCATAGAGGATTTGGATCTAGAAAAGTCACAGTAAACTTAGCATCAATAGCAAATAATTCGCTCTGGACGAGTCCAAGcactacaactaccagcactaccacaactaccaccatcaacactaccaccaatacaactaccaccactacaactaccactgcactacaactaccaccactacaattaccacaactacaactaccaccacttcaactaccaccactacaaccatcaccactaccaccactacaaccatcaccactacaacaaccactactaccactactacaattaccaccactacaactaccaccactaccaatactacaattaccaccactacaactaccaccactacaaccatcaccactaccactaccactaccaccactacaactaccaccactacaaccatcaccactaccactactacaactatcaccactacaactacgtctatcaccactacaaccatcaccactaccactaccaccactacaactacaactactaccactaccactacaactacaactaccaccactacaactaccaccactacaactacaactacaactaacaccactacaactaccaccaccaccactacaactaccaccaccaccactacaactaccaccactacagctaccactactacaactaccacgtgcaccaccaccaccaccactacaactacagctacaactaccaccactacaactaccaccactacagctaccactactacaactaccacttgcaccaccaccaccaccactacaactacaactacaactacaactaccaccactacaactaccaccactacaaccatcaccactaccactaccaccactacaactacaactacaaccactacaactaccaccattacaaccaccacaaccatcaccactaccaataccagcactaccagcactaccagcattaccagcactacaagcactaccagcactaccacaactaccaccatcaacactaccaccaatacaactaccaaccactacaactaccactgcactacaactaccaccactacaattaccacaactacaactaccaccacttcaactaccaccactacaaccatcaccactaccaccactacaaccatcaccactacaactaccactactaccactactacaattaccaccactacaactaccaccactacaactaccaccactaccactactacaattaccaccactacaactaccaccactacaactaccaccactacaactaccaccactacaactaccaccactacaactatcaccactacaactacgtctatcaccactacaaccatcaccactaccactaccaccactacaactacaactaccaccattacaactaccaccactacaattaccactattacaagtaccaccaccactacaactcccaccactacaactatcaccactacaactacgtctatcaccactacaaccaccaccactacaactaccaccactacaactaccatcactacaaccatcaccactaccactaccactaccaccactacaactacaactaccaccactacaactaccaccactacaacaactacgtctatcaccactacaaccatcaccactaccactaccaccactacaactacaactaccaccactacaactaccaccactacaactgctaccactaaaactaccaccactactacaagtaccgccaccactacaactaacaccactacaactatcatcactacaaccatcaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccacaaccactaccactaccactaccactaccaccaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactaccactacaaccactacaactacaactaccaccactacaaccaccaccaccacaaccaccaccactacaacaacaacaaccactacaaccaccaccaccactacaaccaccacaactacaaccaccaccactacaacaaccatcaccactaaaactaccaccaccactacaaccTGTACTTGCTATTCTGGCCGGTAACCTGGATGATTGTGAAGAGAACCAGTTTTTACTGAACGGTGAAACTAAGTGCCGCACTTGTCGCGCATGTCCCGCGGGTCAGATGTACACGACACATTGTGGTTATCAACAAGATCATCGTGGAAACATCAACAAACTACGACCAAGTTGTCAACCTTGCGATGAATACACGTATAAGAGCAAACAATCAATTGTTTGTCAAGAATGTAGCAGTGAGTGTCCAAGGAATAGAGTAATGGTGTATCCATGTAACGCCACACATGACCTTAAATGCGGGACATGCAAAAAAGGGTTCTACACCGCGGACGATGGTAGTTGTCTGCCATGCAGACATTGTTGTGGAAATATTTTTGACCGTCAAAATAACTTCAGAAAACAGTTTGTGAAACAAGAATGTGTAGATGCTGGAATGGGACATTGTAGCTGTCGTCCTCTGAAGGGATGTACAAAAACGTGCCCTACAACGACGACGACTTTGAGTCCTCTTGGAAAGACGACTGCCATTTCAAGAATTACCTTGAAAGAGAACACACGCGATACTGTGAGAAATAAACCTACATCTCCAAATGGCAACAAGACTATAAAGCCGCATCCTGATACACAAGTAGCTAGACAGCGGTTTACTGAATCAGAAGTACCTAAGAAGGGAGAAATTGGATTTGTAGATCCTGGTTGGCTTGTGGCAGTCGCTATTGGTGTATTACTCGTGTCTGTCGTAGGTTTTAGTGTTTTAAAACACTTTAACATCCTGAAGAAAATCAAGATTTTGCTGCAACGCCATAGCAGCGATGCAGCGCATGGGGCACGTGATCATTTCCTTGATAGTGACGAAACTACTGTGGTAACTGTGAGGGATAGATTCGAGTCTCCGGCTCCGTTAAGCATCACAAACTACGCTCAGTTAGTTTGCAACGAAGACAACGATGACCAATCAGATTCCTTCACATTACCGAACCATGTCGTAATCAACCGCGGAGCACAACCTATGGTATGTAGCTGCCTTCATAGCGAGCCAACCAACCAAGTTTCTTGCAACCATACCGAGTTGACTTCTGACTATCAAGACGGTCCCTGGGTGTACCGTGGACAACCCAACCACATGCAGCCCAAAACATGGATACCATCAAGAGCGGAAATTGGTGGCAGTGCTGCAGTATTATATGGAGAGTATGTGGAGCTACAACGCAATGAAGAAGCTACGCAAGGGAACACCGCTGGCAATTCTGCGCCTGTTGAAGAACCTTCTAATATGTCTCCACCTCAGGAAAAACAAATGCCCGACAGAAATGAAGAGATGTCTGTagaagaaaagagcggagaagaaaacagtgaaacagaagagGCGGCCACTGCTGTTCCAGTACCTGTGGCAACGGGGGAGGAACATATGGTTGTCATCGCAACAGCACAGCATAGTGGGATAATAACGAGTCATGATGCTGAAGAATGCTCAAATATCAAGAATGAAGGGTCTAAAGGAAAACGAAGAAAGAAACAGCCAGTAATGAAGAAATCAAGGAAACTCAGTGACGACATGGACGAGATTTCAAGTGAAAGTCTACAGTGCACGTGTGGTAAATGTTCATATCGTCCGTACGTACGTGAGATGCAGCTCTGCCATTGTACAAACTGCGTCCCTCAGCCCGATGATGATCTGTACAAGATAATCGAAAGACGCTGCTTGCGTGCGGAAATCTGCCAAGAACTCAACAAAAAAGGAGTTCCAAACTGGCATGATTTGTCTATATACATACGCATAGACAAACTAATATCCAACATTGAACGCAGTGATAACCCAGCCGATATTGTCTTGGAGAAGTTGAAGGCTTCGCGACCACGACTCAAACTTGAAGATTTCAACGGAATACTAAAGAAGATCAGACGACATGACGTCATGGATGTGATCATGAACCATCACGTGACTTGTCTGTTATGTAGACGTAATTCATTTGATGGGAGTTTGCAAGACCTCTACCTGGAGAAACTCTAA

Transcript

alvinactis_v1_g19374

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR047526	Family	Tumor necrosis factor receptor superfamily member 19/27/EDAR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12120	TNFR-CYS DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0046330	Biological Process	positive regulation of JNK cascade	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-