Gene detail

Detailed information of alvinactis_v1_g19024 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g19024	RETROTRANSPOSON	chr_9	25000292	25005248	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g19024

atgacgccagattcgtcactacagaagctactacctgcatgtcatcgtgccacgcgtcttatggaacgtgctcatcgaaatggtcacagaggacgtgatgcaactatggcaactttggctctattcagaacgaagtattgggtatctcagggaagcaaactggcgagatcagtcaagcgaagttgtcagttatgcaagttacgagaagcaaaatttctagaacaagaaatgtcaccattacctgaagcaagattgaaaccgtcacccgccttcaacatggtaatgctcgatttatttggcccatatgcagtgagaggagaggtgcagaaacgaacaagtggtaaagcatatggagtgatcttcaccgatatgcaggtttctagtgttcgtgggtggccagagaagatatacagtgaccctggttcccagttgatcggtgctggaagagaactcgaggaagcctggaagaacatggaccgacagtctttacagaagagtggcaccaagaacggttctacctggatatttggtcccgctgatagcccatggtatcaaggagcagtcgagtcacttgtcaagtctgccaagcgagccatccatttcgcagtaaacaatcagcgtctttctgtacctgagttcctcaccttatgctacgaggtatccaacctcatgaatgaaagacccattggagcacaacctagtatcgattctacacttaacatccttacacccaacagtctgctacttggaagagcgagagctattaacccattgggatggcaaccacacaattctaacatcagaactcgctatcatctggtacaagcagttaccgaagacgtctggaaaagatggacggagctGGGCCTTACCGATGAACAGGTATCAgtccttgagactgctgaagccggtcataatattttgttaagtggttctgctggaactggcaaatcttatgtggtgaacgagatcgtgagacgtctaaaatcacgcggacgaaatgttgcagtagtgtgttccagtggcatttcttctacagtttttgacggttcgataaaaagcaaaacagtccattcccactacgctcttttaaccgcagatatgccttcggagatggtcatttcacgatctgttatgcttccgcattgtgcagcaagaattaaatctgcgaacgttattatctgggacgaagcaggggtgtcgagtcggaggatctttgaactcgttaatgcaatccatgaaagagtcgctgacgtgaacgggaatggaaaaccttttggtggaaagcaaataattctcgttggggagtttttgcaattaaagctggttccgaatgctttcgacgatggtgaattcatgttcaaatcgttattgtttgatgcggctatccctcatagatatatgctgactcaaatgatgagactagacaacgcaaacgagcgcttcatcagagctatccaagaattgcgtctgggccgatgtacagaagagacgagtgtctatttaaggtctctcaacagaccgatcgctggtgacaacgttcacatttacttcaagaaactgtcggtggaactccacaacttaagattgcttgctgaaatgcctggtgaacgaattcagtacacatgtgaagatCAAGGAGACGTGAGAGGAATCAGCTGTCCAGCATCACAGACATTGTTATTAAAGGAAAATGCAAAAGTGATGCTAGTGTGGAATCTGAATGACAACTTGAAGAATCAGGAGTATTTAAAACAGAAAAGAACGctattagctcctcctcaagatgctgttactgtatgcaacaacacaaatgtagaaaaagaggatcacactagttgtaatcaaaaggaactgtctcctgaatattttaatGTAAGCGATAGAGGTGAACATTTTGGAGATGAGGATGCTGATGCACCAGAGTCATTGTCCATGGATAAGTATCCCGATGGTCTGGTTAAAGAGAATAATGAAATTGCTGATTTGCCAGAAACGTTAAATACTGAGGAACTGTTAATGACTCAGATGATTCCCAATCCAAAAGCTGAATTTGCAGAAAGAAAAAACTTTGTATTACAAGAAGTTCAGGTTGATAAACTGGAACAACTTCAATTATTTTCAAAAATTCAGTGGCTAAGAATTTACAACATATTCTCCAAACACATTGAAGCAAACATGGATGAATTGTACATTTCAAGGAAGGATCTAACAGATGCCACTCACTTGTTATATTTTGTTGCAGTTATTGCAGCTAAAGTTGTTCAGAATCACCAGGAAGCACCAGTCACAGGTATAACAGTTGAGGAAATGCCACTGGAAGGCCTTGCAACGTTACGGCATGTTGGTGGCTGGGCTATTCGAAAAGAGCTGAACAAGAGAAGGACATATGTGCGTGCAAACATGATGTCGACTAATGAAGATGTTAACCAATCAGTAGATGTAGCATACAAAATGTGTGAGCTTCTAGATGATCATGCAGTTGTACAATATGCTTGGATTGCAGAAAACACAGAGTTCCCAGGCACTCTGGATGTAACAGAAGACAGGCAATACCGAGAACGTGGGCTGTTGCACATTAGTGATGAAACATTTGTTTTTTTCAAACATTTAGAGCAAAAAAGAATTGATCTGGTCAATCTTTCTAGGCTCCATCAATCTAGAGACAAAGAAAACTTCTTTGACGAAGCATTGCTAACCATCCAGGAAGATCAAGCCATCTTATCCTCTTGGGTCGACATCTTTGGGGAAGTGGAAGAAAATAACCAGGCCTCGATCCAGGAGATGATGATAAGTTTAATAACACGCTACCTCAGGATGGGTGCATGCCAATTCTTAAAAGATTTTAGGAGGGCACATCAACTTAAGAAAACGTGTGAACACCGTAAAAGGGTACTACAAAGAAAACAGGTTACGGAAGAAAAGAAGAACCATCTTCCTTTTGAGCAAATTTTGAAAGACAACAGTACTGGAAAAACAAATACTCATTTCCATCTGTCATCATATGTAGCAAAGTATGGAAAAGCTGGGATCACAAGGGTATACATAAAGAAATATTTACAAAAACTTTGCCAGGCCTATGGAGTTAAAAAACCCAAATCTAGTGATAAAAAGCAAGATATGGTAAACAGGTTTGTAACAGCAATTACTACTATCAATTCATGTGACAATGCAATGGATAGAAAAATTCCATTTCCAAGATTCTTAGAGAATATACCTAGTTCCAATGAAATCATTGATAGTGGAAGAACAATTCTACGAATTACAATGTAA

Transcript

alvinactis_v1_g19024

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05970	PIF1	PIF1-like helicase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR010285	Family	DNA helicase Pif1-like	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-