Gene detail

Detailed information of alvinactis_v1_g18984 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g18984	TRANSPOSASE, PUTATIVE-RELATED	chr_9	24284283	24290779	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g18984

atgcctacaccgacctcgtctgcttttggaagcgaaggattctcccgattcaactttctattgcaaccgatcagagatctgaccaaaaattgggacatcgaagttgctcctcttttggaagaatatttgaacgaaatcgagaaaattcagatatctttcgatggaggaacgacgaccatgaatttcgctgaagccgctttgttgattcaaggatctgcatgcatttacagcaaaaagGTTGAATATCTTTATACGTTGGTGTATCAAACTTTGGATTTGATTGCAAGTAAAAAgcgtcttcagcaagcttcctccgtggatgaacaaggacaagataaagatgtcacaacacgggcacaggatgaagagTCATGGAAGTACAACATGAAGCTCGTGCTAATGGAGCGTGGTTTGTGGGGATTCACCCAACCAGGCGGAGAAACACCGCCAGAAGCTGATGCAACCGCTACTGTGAAAAATGCATTTCGCTTGCGATCTGACAAAGCTTATTCGCTGATTGCGCTTAATGTTGAAAAGGATCTACAAATTCACATTTCGTCGGTGACCGATCCGTCGATAGCATGGGAGAAATTACAAAAGCAATTTGAGTTCGTGTCAGTCACACAGATTGTCCGATTGACCCGTAAATTCTACGCAGCTAGCATGGATGAAGGTGCAGATATGATGCAGCATTTGACCCACATGACTCGGCTTGCTGAACAGTTGCGAGAATTGAAAGAAGACATTTCTTCGAAGAAGTTCGCCACGGTGGTATTAGGAAGTTTACCGGAGTCGTACGAGAATTTCCTGACGAGCTTGAACGCTAGAAATGCCGATGATTTGGACTGGGAGAATGTAAAAGGGTTGTTGATCGAAGAATCTATGAAGCGAGCTGACAAGAGCGAGAAACAAGAATCCGACAATGCTCTTTTCATGAAGAGAAATCGAGGTTCAAATCAACAACAACATGGCGCCGGAGGAAGAGGCGGTTATTTCAGTGGACGTGGCCGTGGTGGTTATAATCGCGGTGGACGGTTGCAGACTCAGTTTGATGATCAAGAAAAGCATGGAAATGTTAGGTGCTACAGTTGTAATCGTCTCGGTCACATAATGAGGAATTGTCCATTCAACAATCAACAGGATTCGAGCAGAAACGAGGGTTCAAATATGGCCGAATACGCTGGAGACGAACACGAAGGCATTGCGTTAATCTCGAGCACGACGAATAAGTCAGGAGAAtggtttattgattcggcagccacgaagcatatgacaaatgacaaaagctctttgaagaacTATGTAGAATACGATCAGCCAACGAAAATTTACTTAGGAGACGATACCGTAATTATGGCTCTTGGCGAGGGGAAAGTGGGACTTACTTTATGTGAGACAGCAGATATTGTCCTGGATCTGCACAAAGTTTTGTACGTCCCAAAGTTGACCAAGAACTTACTTTCAGTACCTGCAATGGCGTTGATGGGAGCAGAAATCCGCTTTGACAGACGAGGATGTGTAGTGGTGAAGAATGACAAGGAATATGTCATTGGAAGTCTCATGGATAACAAGTTGTATACAGTGAACACTGTCGAGTATGCACAGGCTGCGACAGCACCCCCTGAACCATCGCTAGCAGTTTGGCACTGCAGATTGGGTCATCTCAACTATGACTATATAAATCAGTTGACCAAAAAGGAAATGGTTCATGGTATGAATTACAATGCTACTACTCAAGATGAAAAGCAATGCGAAGCTTGTATTCTCGGAAAAATGCAGAGGAAATCTTTCCCCAAGCACAATGAGCACAGGGCAACTAGGCATTATGAGATTGTTCACAGCGATGTATGTGGCCCAATGCAAGTTGAGTCGGAAGGTGGAAGTAGATACATGTTAACATTCATTGATGATTACTCGAGATATACCACTACTTACTTCATCAAAAGCAAAAGTGAAGTACTGTCTAAATTCAAGGAATACACCAGTTATGTCGAAAAACAATTTGGCCATCAAATTAAGATCCTCAGAAGTGATAATGGCGGAGAGTATATTTCTAATGATTCCCTTAAATTCTGCAAAGAAAAGGGAATTTCTCGTGAGTTCACCAATCCACACTGTCCTGagcaaaatggagttgcagagcgtctgaatcgcacaattatggaatcggcaagatctatgattaaacaagccaatttaccactcaaattctgggcagaagcatgcatgtttggttgtgtgagctacgtgcatgttcctgacagtcagcgcaagaagctagatgctaaagcGCGCAAAGCAATCTTTGTTGGATATCCTCCTGGTATAAAGGGATACAAGCTGTATGATTTAGAGAAGAAGAAGTTTGTAAAATCTGAATCAGATAATACAATCCACACAGATCTGAACAGCTTCTCTCCAGATATGGATGAAGAAATCAAGGATGGTCCCGAATTTCCCATACCTGAAGCCCCTATAGAGAGAGAAGAGAATGTTGAACCAGTGGGAGTGCCAGTTGGAGAAGCACCAGTAGGGAGAACGTATGAAGATACATTTATAGAAGAAGTGCAAAACCTAGGACCAAGGCAACGGAGACCACCACGCAGATTTCGTGATGATAGCTGCCTGCTAGTTGATTCCTTAACTTCAGAGATCGATGAACCAAACTCAGTAGATGAAGCTTTGAAGGGTGAACTGTCAGCGCAATGGCAAGAAGCCATGAACTCTGAATATTCCTCTTTATTAGAGAATGATACATGGGAGTTAGTACCACCTCCCGAAGGAGCTAACGTCATTGGATCTCGTtgggtatttaaagtaaagcgtggcgagaatggctcagtggatcgctttaaaggagacttgtcgcacaaggatattcacaaatga

Transcript

alvinactis_v1_g18984

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF06278	CNDH2_N	Condensin II complex subunit CAP-H2 or CNDH2, N-terminal	Family	Interproscan
PF13976	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR009378	Domain	Condensin II complex subunit H2, N-terminal	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR025724	Domain	GAG-pre-integrase domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-