Detailed information of alvinactis_v1_g18984 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_9:24284283...24290779
NR annotation: CAB4006962.1, Retrovirus-related Pol poly from transposon TNT 1-94, partial [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q641G4Condensin-2 complex subunit H2 OS=Xenopus laevis OX=8355 GN=ncaph2 PE=1 SV=1
Q28GV1Condensin-2 complex subunit H2 OS=Xenopus tropicalis OX=8364 GN=ncaph2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF06278CNDH2_NCondensin II complex subunit CAP-H2 or CNDH2, N-terminalFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR009378DomainCondensin II complex subunit H2, N-terminalInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

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