Gene detail

Detailed information of alvinactis_v1_g17734 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g17734	MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED	chr_9	341840	368908	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g17734

ATGACGGCTTTAGACAACAGCTCTTTGCTGGATGAGAGATTCAATCCTTTGTATTTTCGTTCACAAGGAAGTGTATGGTCGATTTTAACTCAATTTGACATCAATGACTCAGATTCTGTCAACGAATCTCCGTTCAGTAGGAAAGGCAGTACGTCAGGGAGCGTAAGAAAGAAGCTTGTTCAGCGGATTCTCTCTCCAATCCTAAAGTCTTCATCATTTGATGAGAGTGAAGTTGGCCGATCATCGAGTCCTACGGAAATCCCTTGTAGTCCTGTCTTAGGAGATGTACTGCTGAACGGCTGGCCACGCGGGCTCGTAGATATAGACGCTGTGACATTCGCAAAGGAGATCACACTAATTGACAAGGAATTGTTTGTAAGGATACTATGGCACGAGCTAGACAGTTGTGGTTGGATGACTAAAGATAAGTACGTTCGTTCACCTAACGTCATGGAGATCGTGGAATTCTTTAACCGAGTTGCTTTGTTAGTCGCAACAGAAATTCTGGCCGAGGAAACGCCCCAAGCGAGGGCACGTGTCATCTGTAAAGTTATTCAGATTGCAGATAAATGTCGATTACTTGGTAATTTCAACTCTCTAAAGGCGCTGATGGCAGGTCTTCAGTCTACTCCGTTATACAGAATGAAAGAGACCTGGAAAGAAGTCTCATCCAAACGAAAAAAGAAGTTTCGCGACCTGTCGATTCTGATGGGCGAAAGTGATAACTTTGCTTTGTACCGTAAAGAGATAGCAAACTGTGTTGCAAATGGTCCGTGCCTTCCTTTCTTTGGAGACTTTCTCACTCAGATAGCACAGTCCCATGCTTTCATGTCTGTCAAGAGAAAAAGACAGAAAACAGCCAAAGAAGCAGACCCACAAGACTGTGACTCTAATGACGGTACGCCAGTGAATGGCGTGACACAATGTAACGGCGTGACACCGTTGTCACACACTGAAGTTAACTCCTGTCCAACTACTCCTAGAGAATTCTCGCCTGACACCTCGTGCGATCTGGTCGATGAGTCACGTGATATCACTGTCACGTGCTCATTGCATGACATGTTGTCACGCGACAGACCAAAACGTAGTTCGTCGCGCATGAAATTTAGACGATTTTACAGTCGACAAAACAGCACAGAAATCGACACAACGCCGTTCAACCACAACAGAAATAACAGCGCTGAACTACTTGATGTCCATAGATTTAAAGCAAAGATGATGCCAGCAAGCTCAGACTCTGTAATAGCAAATTCCAAGAACCTTAATGGTCACTATGGCAACAGTCCTCGCACACCTTCATCCGGGAAACCACCGTTGCTAAGGCGACTGTCCGAGAGTTCTTCGTCTTCGTTTTTCAGCGGTGGAGGGTTTTCAGTGAAGCCCAAGAGACGGTTTTCAGAAAGCTCCAAGTCATCCAAGACACGGCGGTTCTTTCTTGACGGTTTTGTTCGACGAAGTACCAGTAGCAACTCGGTCAAAGAAGGACGTGTTGCTCGAGGTATTTCTAACGAGGTACTGGGACATAGCTTTAGTACCCAGTCCATCAGAGAAGGTTCATTGACGTCGGTCATGGGAAAGAGTGTCAGCACACCGGTGATCAAAGGGGATATTTCACGGGACGTATCGCGGGATTGTTCTTGTGAGAGACTTGAGAGTGACACAACATTTGATGAGGAGAGATGGCAGACATTGGTTAAATCGTCTGAAAGAagccatatagCTGGGACCGAGTTACAGCTGATCAAATACCAAATGGCTGCCGTACAGTACGACTTCGCTAGCAACACAGAAGTTCGACAATTCTTACTCAACGCTTCATTCAATACAGAGGAAGAGAACTACAGACTATCTTTGAAACGAGAACCTCCCGTCAAGACCACGTTTACGTGTTTACGTGTATCCGTTATTTTGTGTGTTCTTCTTCTGACTGTCGGCAAAGCCTTGCAAGTCATTCCATCCAGTAATTCTTTCACTAGAACCGTCCTCATCAACCTTGGTCAATTCATTACTATGTTAAGCTGTCCTATTGGTCTTGGAGCCCCACCGTCGATATCTGCTACTTGGTTCCCACCCGAAGAACGTACCACTGCTACTGCCATAGCAACACTAGTGGCGTACCTTGGTCTGTCTGTAGCATTCATTATTGGACCATCCATGGTGCACGTGATACCACTAACTAATACAAACAGCACCAACAATATGACAGTATACGACATCCAAGCAATGGATGACAGCATCACTAAATACATGGCATATCAGTTGGGCATTAGTGCGTTCCTCTTACTCTGTGTGATAGTATACTTTCCTGACAAGCCTCCACTGCCTCCCAGCGCATCTTCAAAGGTCAAACATCTGGATTTCTTGGACGGATTGAAGAAACTTTTCACGAACAGATCGTACCTTCATTTAGCGTTTCTGTTCTCGATAAGCTACGGGGTATATTTTGGATGGATGGTTGTGCTGGCCATGGCAGTCAAACCGTTTGGTGTTGGTGAAACATTAGCTGGCTGGCTTGGATGTGCTGCTACTATAGCTGGCTGTTGCTCTGGTATCTGTTTGGCAAGATTGGTGGACTACATGAAACACCAGATCAAAGTAGTCCTGATTGTCTTGTTTCTTGGTACATCGATATTCCAACTGCTCTTCAGTCTAACGTGCTCTAACGTCATCCCTTACTCCGAGATTCTACTGTACTCGTCCATAATCCTCGGGGGCTTATTCTTTAACGGTACAACACCACTTTTGTTTGAGATGGCCATAGAGACTGTGTATCCAATAGCTGAGGGAATGACCGCTGTTCTACTGCTAGTAGGAGGgcctattcctattgctggatactcagcgcctgtcttcgacgatattcggttattatacgttcactgcgtatcaaaagaagagttctcggtttccgtaaccggcctagaagggcttgaagctgtttttaggatggttcacatcaGTTTACGTGTATCCGTTATTTTGTGTGTTCTTCTTCTGACTGTCGGCAAAGCCTTGCAAGTCATTCCATCCAGTAATTCTTTCACTAGAACCGTCCTCATCAACCTTGGTCAATTCATTGCTATGCTAAGCTGTCCTGTTGGTCTTGGAGCCCCACCGTCGATATCTGCTACTTGGTTCCCACCCGAAGAACGTACCACTGCTACTGCCATAGCAACACTAGTGGCGTACCTTGGTCTGTCTGTAGCATTCATTATTGGACCATCCATGGTGCACGTGATACCACTAACTAATACAAACAGCACCAACAATATGACAGTATACGACATCCAAGCAATGGATGACAGCATCACTAAATACATGACATTTCAGTTGGGCATTAGTGCGTTTCTCTTACTCTGTGTGATAGTATACTTTCCTGACAAGCCTCCACTGCCTCCCAGCGCATCTTCAAAGGTCAAACATCTGGAATTCTTTAGCCTGCGTAGCTCGGCGGTCtggaaggggattgggaagggggagtgggagttggaAAAAGAAGGAGGAGAGGGGGTTAGCTTCCCAATCCCCTTCCAGACCGGCGGTCTACGCAGGCTAGGATTTCTTGGAAGGATTGAAGAAATTTTTCACGAACAGATCGTACCTTCATTTAGCGTTTCTGttctcgatttggtgacaatggcagCCCCACCGTCGATATCTGCTACTTGGTTCCCACCCAAAGAACGTACCACTGCTACTGCCATAGCAACACTAGTGGGGTACCTTGGTATGTCTGTAGCATTCATCATTGGACCATCCATGGTGCGCGTGATACCATTAACTAATACAAACAGCACCAACAATATGACAGTATACGACATCCAAGCAATGGATGACAGCATCACTGAATACATGGCATGTCAGTTGGGCATAAGTGCGTTTCTCTTACTCTGTGTGATAGTATACTTTCCTGACAAGCCTCCACTCCCTCGCAGCGCATCTTCCAAAGAGAAACATGTCCCTTACAAAGAGGGATTGAAGAAACTTTTCACGAACAGATCGTACCTTCATTTAGCGTTTCTGTTCTCGATAAGCAACGGGGTATATTCTGGATGGACAGTTGTGCTGGCCTTGGCAGTCAAACCGTTTGGTGTTGGCGAAACATTAGCTGGTTGGCTTGGATGTGCTGCTACTATAGCTGGCTGTTGCTCTGGTATTTGCTTAGCAAGATTGGTCGACTACATGAAACACCAGATCAAAGTAGTCCTGATTGTCTTGTTTCTTGGTACATCGATATTCCAACTGCTCTTCAGTCTAACGTGCTCTAACGTCATCCCTTACTCCGAGATTCTACTtctagacttaGTGATGAGAAGAGCTGGAACACAGTTTGCTGCAACCGACGTCTTGTAG

Transcript

alvinactis_v1_g17734

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00617	RasGEF	RasGEF domain	Family	Interproscan
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR049680	Family	Solute carrier family 49-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10924	MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0051184	Molecular Function	obsolete cofactor transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-