Gene detail

Detailed information of alvinactis_v1_g174 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g174	WD40 REPEAT PROTEIN 12, 37	chr_1	3586493	3611892	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g174

ATGCGTATGGCTGTCTCATCATCTTTGAGCTTCTTTGGAGTAGAGGgacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggatccgttggataggacttatccgttggataggacttatccgttggatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccgttggataggacttatccACGAAGACATGTCAAACCAAATCAAGAGGTTGCTAAAAGGTTACGACAGTAGAATCCGACCACATTATAACGGTGCACCAGTCAAGGTCTCTATTGACTTTTCAGTTGCTTCATTTGGAAGCATTGACGAAGTAAACATGATGTACAGCCTTGATATGTTCTTCCGTCAGACTTGGATAGACCCAAGACTTCGTTTACAAATAAATGAGACTTTAACCCTGACAATGGGCACCAAACACCCCGCAGATTATTTTTGGGTTCCTGATACTGTGTTCTTGGACGCCATTAACTCACAGATGCATAGTGTGATGGTGTCTAATCACAAGATTGATATCAAACCTAACGGCAAAGTCATCTGGGGAACAAGAGCGTCAGTAACGGCACGCTGTCAAATGGAGCTTCATCGATTTCCAATGGACGAACAGACCTGTGACTTCACCGTGATTAGTTACGCTTACCCAGTTCGTCATCTCTTTTACCGTTGGAGGAATTCACCCGGTGTGAAGGTACTCAATGGTGACCTGTCACAGTTTTATTTAACCAAGATAAAGACAGCTAACAGAAATGATCGATACGTCGCAGGCGAGTATTCAGTGCTGATAGCAACattttcattcaagcgtcgtgtgggcttctatctcatccagatctacgtcccctgtatggctatagtatttgtagcgtggatgtctctatgggtagataggaacgccatcccagctcgcatcagcctatgcattaccactctcctcaccatagcaaccatatggggtaatgtcaatgccggtatgccacgtgtatcatacgtcaagtctattgatatatatttgatgacgtcatttagctttgtactcggaactcttgtagagtttgtTGCAATCGCCAACCATGGACTAGACCAAAAGCAAGCTAGTGGGCAGAAAGTCAAGCCTAAAAGACTGTCTATAAGACGTTCACGTTCACCAAACGTCGAAGCGAGCCGCCATGATGGCAGTGAAGGAACAGAAACAGTTTTGCCTCCGGCGGCTCGTGAACGACTCTGGAACCTTTTTGAACAGATAGAAAGAGAATTCGAAAATGTTTACATTGAGAACTTGACTTTGAGGGAAAAAGTGGAAAAACTGGAGATAATTATTAATGGCGAGAAAAATATTGATGGCGAAGTATCATTGGAAGGAGGACCAGTTAAACCAGGATACCTGAAGAAACCTTCTGCAAGTCAACTCATGTCACAGAAACTGAAGACAACATATAAAGCTTCAACTAGCAAGATTGTGTCAAGTTTTAAAATTCCAAACCAAGCTACAAGTATTGAGAGTCACAGGCTAAAGAACTATGTTGGTCATCGTGATGGAGTATGGGAAGTGACATATGCTCGGCATGGCCCTGCAATTATTGCTACTGCATCAGCAGATCGGTTAGCAAGAATATGGGATGTAGAAACAGCCCAGTGTCTGTTGAAGTACTTGGGCCATATTGGATCAGTAAATTCTGTCAGATTTCATCCGACTGAGCCTCTTGTTTGTACAGCCTCTGGTGATGGAACTTGTCATGTCTGGAGAGCATCTGTCTCAATCCCTGAACCACGTTCACTTCCTGGATCTGCCGATGAGGCTGACGCTGGCCAAAGTGACCAGGATGACTTGGAAGGCTTTGATAACCAAGATGGTTCAACTCCTACTATTCTTAAATCTGCTACTTTAGAGCTGAAAGGACACGAAGGGTCGCTAAGTGCAGCAGATTGGTTCACTACTGGCAAACAAATAGTAACAGCATCTTGGGACAGAACAGCTAGATTATGGGATGTAGAAACTGGTGAACAAGCTCATACACTCACAGGTCATGACCAAGAACTGACACACATATGTACCCACCCCACCCAACAGCTGATAGTGACGTCATCTACCGACACAACCTTTCGTTTATGGGATTTTAGGACACCCTCTATTCACTCTGTCAACGTTTTCCAAGGGCATTCCGAAACTGTTCGATCCACAGCTTTTAGTACAACAAAGGATATCGTAGTGAGTGGGAGTGACGACCGCACTGTAAAGGTTTGGGATCTAAAGAACATGCGGTCACCATTAACAACGATAAATGTTGATGCTGCTGTAAACAGATTGTCTGTTTCACCAATCAATAATGTTATTGCAATTCCTCACGATAATCGACACATTCGTTTGTTTGATTTGAATGGTGTGAGATTAGCAAGACTGCCGCGAAGAAATGGACAGGGACATCAAAGAATGGTTTGTTGCACAGCGTGGGGTGATGAGAATTCAACTAAAGGCTGCAACCTCTTCTCTTGTGGATTTGATAGACGGGTGCTTGGCTGGCAAGTCATCGCAACCAAAGAAGAAAAATGA

Transcript

alvinactis_v1_g174

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF02931	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR006028	Family	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	Interproscan
IPR006029	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR006201	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR006202	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR018000	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036719	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR036734	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR038050	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19855	WD40 REPEAT PROTEIN 12, 37	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005230	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0034220	Biological Process	monoatomic ion transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-