Gene detail

Detailed information of alvinactis_v1_g17158 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g17158	CYTOCHROME P450 FAMILY 46 SUBFAMILY A	chr_8	19195216	19206851	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g17158

ATGCAGCATTCTGTGGATTTTTACCTAGTTTTCTTCCCGATCGCCATGAACGAGTATCTTTCTCTCGGTGTTCTTCTAGTTGGAGGAAGTTTGCTGATCGTCGTCGTCCTGTTTGTGATTGTCGTACTTGTCTACTTCCACTACCAACATACGCTCTACCAACACATACCGGGCCCAAGACGTGATAGTTTCTTTTCTGGAAATGTTCCTTCGTTACAAGAGCAAGTTCTAGTACACAAGAGAGCTGTTAGCGAAGTTTGGTTTGATTGGTACTTAGAGTACGGTCCGGTTTATGTGTTTTGGGTGTACTGTAGAGCAGTTGTGGTTGTTGCAGACCCTGAATCAATCAAGACAGTTCTCATAACTCTCAACCTTCCCAAGGCGGCCCGTGTGTACGGTAAAATAGCGTATTGTTTTGGGCAACGCTTGGCAGGTAATGGCATTTTGACGGAAACGGATCACGGAGCATGGAAGAAAAAGAGATGCTTGCTTGATAAGGCGTTCCATCGGTCATACTTGATGAACCTAATGGGGTCTTTCAATGGCATTTGTGACGTATTTATGACAAAGATTGGAAAGCTAGCTGATGGGAAAACAGCTGTTGAAATGTCGGATGAGTTTGGAAGAGTCACCTTAGACGTGATTGGAAAGGTTGGTTTTGGCATTGACACTAATGCTATAGACGATGCAAACAGCCCATTCCCATCTGCTGTCAGCCAAGCTCTTCAAGGTGTTCAGAGTGGACTTAGAAATCCATTTTGGATGTTGAAGTTCTGGACATTCCCTTATCAAAATAAAGTAATAAAGGCAATCGTTTACTTGAGACAGTTTGCCCAGAGTGTCATTGAAGACAGAGTACGACTTGGAGACAGTGAACACAAAGACGTCTTGGCTTATCTTGTTTCAATGAGTCGAGCAAATGATGATTACAAGCTTGAGGATATAGTAGATGATTTTGGAACTTTCTTTATTGCTGGACAAGAAACCACTTCAAACCAGCTTGCATTTACTCTCTTTGAAATACTATCTCATCCACACATTCAAAACAGAATTTTAGAAGAAATTGAGGATGTTTTGGGCTCAAGAAATTTCATTGAATATGAAGATCTTGGGAAATTGGAATACCTTGGTATGACTTTGAAAGAAGGTCTGCGTAAGCACCCACCGATTAGTAGCACACAGCGCATGCTTCTCCAACAACACAATATCGGTGGTTATGAGATACCTGCGATGACTCCAATACATGTCTCTTTCTACATCACACAGAAGAGCCCCAACTACTGGGAAGATCCAGAAACCTTTGATCCTATGAGATTTTCTTTGGAAAATAAGATTGGTCGTTCTAGTACACAATATATGCCCTTCTCTGCGGGGCCACGCTCGTGCATAGGGAAGACGTTGGCCGAATTTGAAGCTAAAGTCATTATGGCAAGACTTTTCCAGGAATTTAAATTAGAACTTGTTCCTGGACAGACACTAGCTATTGTTGAAAATCTAACTGTAAGACCAAGGGATGggtatgaaactttgaacaagcgtgttccatctagaaaagcatgcggtattccagagagtgatctgatggtatttttagaccatgagATCGTTGGAGGATGTTTCCTGGGCTATAACTTACTCAGTCTTGTCTGTAGAGCCCTAACTGGTGTGAGGGCCTTCGTCCTTCCCGCGTTGGGCTTCAAGCAAGACTTGAGAAGCTTCGGTAGTTGGGCAGTTGTGACTGGGTGTACGGATGGCATTGGAAAGTCTTTTGCATATCAGTTGGCCAAAGAAGGGATAAATTTGGTTCTTATCAGTAGAACTAAGGAAAAATTGCAAAGTCTGGAAACTGAAATTCAGTCTGTATACAAGGTGGAGACCAAGATCATTGAGATGGACTTTAGTAATGGTGCAGAAAAATATGAAGGAATGGAAGAAAAGCTGGCTGGTCTTGATATCGGGATATTGATCAACAATGTAGGAGTCTCTCATTACCCAGAATTCTTTACAAACATGTCAAGAGAGAATGTTTGGAAGATGCTCAATGTGAACGACTTGTCAGTTATTATGATGACGCATATGATCCTGCCTGGTATGGTTTCAAGACGTAAAGGTGTGGTAATGAATGTGTCATCCAGAGCTGGCTTGGAACCAATGCCGTTGCTATCAGTTTACTCGTCATCTAAGGCCTTTGTAGATTTCTTCAGTGAATGTCTTGCTGCGGAGTATGCTGACAAGGGAATCATTGTCCAGTCAGTAATGCCTCTCTACGTCGCTACCAAGATGAGTAGGATCAGAAAAGCAAGTCTACTTGTTCCAGGCCCTGATGATTATGCCCGCCAAACCTTGGGAACTATCGGTGTGGAGTTGAGAACCAATGGATGTTGGAGTCACTCTTTACAGgagtttgttactagcttgattcctagtatagtcagaaaaaaagtggcatggaatttaatgatggcacgtagaagagctgttctgaagaaaatgggttacaaatctggacacaaggattaa

Transcript

alvinactis_v1_g17158

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067	p450	Cytochrome P450	Domain	Interproscan
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001128	Family	Cytochrome P450	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR002401	Family	Cytochrome P450, E-class, group I	Interproscan
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR039983	Family	Cholesterol 24-hydroxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24293	CYTOCHROME P450 FAMILY 46 SUBFAMILY A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0006707	Biological Process	cholesterol catabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0033781	Molecular Function	cholesterol 24-hydroxylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-