Gene detail

Detailed information of alvinactis_v1_g17132 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g17132	RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG	chr_8	18765746	18791268	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g17132

atgcttatgttaggtccattttcacatgacacattcatatttccgtgtgtttggaagactgctagagttcggcctttgcataagggagatgatgcatcagatatggataattatcgaccaatttctgtattaccagtactggcaaaggtgatcgaaaagcacgtgcatgcgtctttgtataactatctctgtacaaacaatctactttacaagtaccagtctgggttcagaaggaatcactctactgaaacagccattatcaaattagtggatcagctgttattcaatgcagataagaacatggttacttcagcagtgttcattgattatcgtaaggcctttgataccgtcagtcacaatgtattacttcgcaaactggaagcctatgACCTAAGTGCTGATGCCGTGTCCTGGTTCGCTTCTTATCTTCAAGAAAGACAACAATATGTTTGCATCGGGGGTTATTCCTCTCCAATGTTACCTCTAGTCGCCGGCGTCCCGCAAGGCTCTGTACTTGGGCCCTTGCTATTTCTTGTATTCATCAACGACATGCCTCTAGAGTCTAAGGAGGTAACTACTGACATTTACGCTGATAATACCACCATTACTGCCGCTGCTGATTGGTCCAAGTCCTCGGAGCTAGTTTCAACTATGAACTTTGCCATGGAATCTATCACTAACTGGACTTCAGAGAACAGATTGTCCATTAATCAATCTAAGACTAAATCTGTATTGTTTGCCAGTAAGCGAATACGGTCGAAGATGCCGCCCAACAACCAAGATTTAAACATCACGCTGCCTGGTTCAGATACGCCTATTACTCAGGTCAAGTCTCAAAAGCTTCTTGGAGTCACCCTTGATCAAGATCTAACATTTGATGACCACGTGGAAAGTTTGGGGAAGAAACTCTCAAAAAGGATAGGGCTACTAAAAAGGATTAAGAACTGTCTCCCATACGAGGAAAGAGTTGTATTTACTTTTATTAAACTCAAACAAGTAATCAATACAGTCATTGCGCCTattgctggtttgcaatcaatccctggagatctaaagtacaaagatgcagtggccatgttggtggaacaaacaagagaagctaatgaggatggttatgatgatgatcttgatgatgcttgtcatgtccatgatgacgatgatgaccatgatgaccatcatcatggtggccatgttgTTCTGTTACAACAACCCCGTTCAAATGTGCTTGGCAAAGCTCTTCTGCTTCGTGGAGCGATTGCCATGGCAACAGATGGCCCAAATGCAATGTTTGGAAGCACTACATCTGGGATCCCTTTATCAACCTTAGATTACGGCTATATTGGAAAATGTACCAATGTTTCTGAACTGGAGAAAATCGTCAAAGTCTTGAGATCTGGGGATGAAGGATTGTATCCTGAGTTAATATTATTTGCAGAGAAACAGCTAGAGAGTATCCACCCCAAAAGTAAAGTATTACGTAAAGATATTCCTATACAGTCATACAGAGATCTAGATAATACAGAGAGAGAACAGCTTTCAGATGATTTTAAGGATTGGATCTCAGACATCAACCAAAAAGACTCTCTATTACAGAAAGACAGTGAACACAATCTATCCAATAATGATTATCTTCCTCCAATAAGATCAACCAAGACAGTAGGCTCTACAACCTCAGACATTTCACAGGTTTCAGGTGAAAGAGTGGGGAAAAGTAAAGTCAAGAGATCAGCTGCTCCTAGAGGATATCAAGACTGGGATAAGTTTAACCCTGATGAAGAATTGAAACTTTTAGAAGAAAAAGAAGACAGGGAACTGAAGATAAAGAGAGAACAAGCAGAACTAAATGCAAAAGAGGCGGAATTGCCTTCAGAAGTTGAAACAATTGGAAAAACAGATGCAGAGTTAAATGTGCTGGCAGACAGAGAGAAAGACAAGGGAAACGAAGCCTTCCGTTGTGGTGACTACAGAGAGTCCTTGGTCTATTATTCACGCAGTATCAACTACAAACCCACCGCTGCATCTCACAACAATCGAGCTTTTGCCAACTTGAAGCTAGAAAAGTATCTGGAAGCAGTTGAAGATTGTAATGTGGTTGTTAGCATGGAACCAAACAATCTTAAAGCTTTCCTAAGGAGAGCCCTTGCACACAAGAACAGAGGAGAAGGCATCAGTGCCAGAGAAGACTTGAATAAAGTACTAGAGATTGAACCAAATAACAAAAGAGCCAAGGAACTTCTGAGTGAGCTTAATGCAAGCAAAACTGTTGAAAATGGCAATACAGCTACAGCTCAAGTAAATGGAGACACTCATCCCAAGCGAAAAGGAAAGCGCTTGAAGATCATTGAAGTTGAGAATGATGAAGAACCAGCAGTTGTTGGAGAGGAAAAAGAAATTGAAAAAAATATCGATGAAAATGGCAGCTCATCCCATGAATCAACCGATGGTAACTGTTTGTCGTCGTCCACTAACGGCAGCAGTCCTACTGAGCGTAGTAATTTGATTACATCGGACACAAGTGAAGAAACCAAGACAGAAACTCCTGTAGGAAGTGACACAGACACCGTTATCACTCCAACCAAGAGTGACGACTCGGAGGCCCAGACAAGTAATGGTGTAGTTGAGAAAGGACGCACAGAGATATCAGCGTCTCAGCCAGTTAACTCGTCGCCTCCCTTGGTAGAGCTGCCTGGAATAGTACTGAAGGCAAAAGATGAAGGGACTTCGTTGTACAAACTCGGTAGATATGCTGAAGCAACGGAGAAGTTTACTATGGCGATAGAGATTCTAGAAAAAGATAAATCACAGTTTTTGTCAGCCCTGTCCTCCCTGCTAAACAACCGTGCAGCATGCCTGCAAAGAATTGGTGATGCTTCTGGTTGCGTCAAAGACTGTACTGCTTCGTTAGGGTTGATTCCAGGCTCTATGAAACCGTTACTAAAACGAGCAGCATCTAATGAAATGCTAGAAAAATACGAGCAGTCGTATTTAGATTACAATTCTGTGATATTCGTGGATCCGATCAACCAGGCTGCTATGCAAGGCAAATCAAGAGTGAGTAAACACCTAATCAACATGTATGGATCGTCATGGAGAGATAGACTTGCAGGTGTCAAAGTATCACCAACACCAACATCCTCAGAGTTACTGAATACAGATGACAACGCAGCAGAGAAATCCTTGAACATTTTACAAACCAAACCAGCCCCAACGGTGAACTCTACGACCCCTATTGCCCAGATCCCTCAGAGGAAAACCGAAAAGAAAGAAGAGCCAATTGCTGAAGCGACTGTTGAGGAGAGATTCGAACAGTGCAAAGAGAAGGGCAACAGTTTTGTAAAACAGGGCAAGGTGGAGCAAGCGGTTCGTTGCTACACAGAATGCATTGAACTCGACTCTACCAAAGTAGCAGTCTACACTAACAGAGCTCTCTGCTATCTACGATTGGAAAAGTTCATTCTTGCCGAGGAAGATGCTTCAAAAGCCCTCGATCTACAAGAAGACAATCTGAAGGCACTGTATAGACGTGGCCTGGCTAGAAAGGCGTTAAGAAAGTACGAAGAAGCTGCAAAAGACCTCGTCAACTTAATCAAGATAGAACCCTCAAACGCGTCTGGCAGAAAAGAACTTGAAATTGTGTTGAACCTGTGCCGAGAGGCGCGAAAGGCGAAGAAGAAAGTTACAAACGAGTCTCAGCCGACCGTAAGCGAGATAAAAACGAGCGAGAAGCAAAATGACAGTAAAGTGGAACCAAACAAGGCAACGCGACGGAGAAGAGTGCAGATAGAGGAGGTCAATAGCGAAGAGGACTCTGATCAAGCCTCTAGTACCACTAGCTCGCCTTCCGTGTCCAAGAAGACACCAGATACTTCGTCTAAAGCCACAAAGAACGAGAGTATACAAGAAGTCTCAGACAAGACCGATAAGGAAGAAGCAAAAGCCAAAACATCTCCGGTGAAAGAACACAAGAGGAAGAAAATCAAGCTTCACAAGGCAACGGCATTCGACTTTTACCAAGCCTGGAACTCAGTGAAGCAAAAAGATCTCGCTTGTTATGCAGACATTTTAAGGCAGCTCCAACCAGCCAAGCTACCAAAAGTTCTGAGTAACAAACTCGACGCTGACATGTTTCGCTCTATCGTGGGCACGGTTTCCGAGCAATTGCTTCCTAATGGCGAAGAGAAGTTATCGTTTGAGATCCTTCAGCACATGTGTAAGGCTCAGAGGTTTGACATGGTGATGATGTTCCTTGATGCTAGTGATAACAAAGCGATCCGCGACATTTGTTCAAAACTGGCGTCAGCTCGCAGCAAGGACGAATTCGTAGACGCTGATACCTTCAACAGTATTTTGAAAAAGTACAACGTTTGA

Transcript

alvinactis_v1_g17132

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF13877	RPAP3_C	Potential Monad-binding region of RPAP3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR025986	Domain	RNA-polymerase II-associated protein 3-like, C-terminal domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR051982	Family	Ciliary Assembly and Mitochondrial Import	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45984	RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006626	Biological Process	protein targeting to mitochondrion	Interproscan
GO:0031072	Molecular Function	heat shock protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-