Detailed information of alvinactis_v1_g16765 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_8:12795278...12796399
NR annotation: CAB3984669.1, LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9LMK2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1
Q9FGH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana OX=3702 GN=LSH5 PE=1 SV=1
Q7XDD0Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04852ALOG_domALOG domainDomainInterproscan
PF00589Phage_integrasePhage integrase familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013762Homologous_superfamilyIntegrase-like, catalytic domain superfamilyInterproscan
IPR006936DomainALOG domainInterproscan
IPR011010Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan
IPR002104DomainIntegrase, catalytic domainInterproscan
IPR040222FamilyALOG familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31165PROTEIN G1-LIKE2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0009299Biological ProcessmRNA transcriptionInterproscan

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