Gene detail

Detailed information of alvinactis_v1_g16188 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g16188	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	chr_8	3979245	3983369	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g16188

ATGCGAGTTAGCGTTGGCTATGTAAGCAAAGTTGTTCAATGTTACGAAGACGACAACACATCTCTACCTGGGCCGCGAAAAACACCCGTTCGAAATAAAGTAACTGCAGATGTTGTTGAATACGTGGAGTCCGAAAAATTATGTAAACCTAGTATATATACAACTGAGATTCAACAGCGTTTGTTATTCGATGGAGTTTCGCCCCCTGGTCATTTACCATCTCAATCTGCAATAAAAAAGTGCATTCGGGAAGACTGCAGAATGACAAAGAAAAAAGTTTCACAAGTACCAAAAGAATCATTGTCGCAAGCAATTGTAGATTATACTGATTATTTTCTTGATCAAATTGGACAACGTGATTATACCAAACTTCACTTTTTTGACGAGAGCAGTGTTATTGTAACTTCAGGGAATCGCGTATATGGCAATTCCTATATCGGTGAACCTGCCATTGAATTCCAACGCTACGCCTCCAATGCAAATTACACGATCAACTTGCTTCACTCTGTACTGGGAGTGGATTACTTTGATATTTTGAGAGGCCCTTCTAATGGAATGGAGATTACAATGACTGACAGCGAGGATAAATCGGAGCAGAATACGACTCTCACACAATTAAAAACTCTGATGGCTTCTACGTTAGCAGAGTTTAAAAGTGACTTCCTTGGGCGTATTGATGAATCTATTGCGCAAGTCTATCGCGACTTCGAGGTTGAAGATCAATCTGAACACGAACATGACGATGGAAGCGCTGAAGTTGAGGCGAGAATTGACAGTTTCGTCCAGGCTTCAAACCAAACCTCAGAACCTGCTGAGGCAAGTGCTGGGAGCTCAGAATTCAAGTTGTTCGCAGAGCAATTTTCCACTTCGGAAAAAACATCTCCAGCCATTGACAAGGACCTGTGCAATATCGTCATGGACCTCCTCAAGGAGAGACTTCCCAAGGAGAAACTGGCACAAATTCAAGAAAAGTACTTAAGGCCGGAGAACTGTGCCAACCTTGTGGCCCCAAAAGTCAACAAACAAGTCTGGTCACAGCTTAAACCAGACACAAAGAACACAGATTCTTCCTTGCAAAAGCTTCAATCATCGATGTTGTCTGCTTTGTATGCAATTCTGGAAGTTTGTAACAACATGTCCAAGACCAAGGCTTCTAATGATAACCTGACAAGCCTTACTCATGCAGCTGTCCTGATGTTATCAGCCAACAGGGAGCTCAATGTTAAGCGCAGGGATTTGCTTCGCCCTGACCTTAACAAGCAATATGTGGTTCTGTGCAACCCATCCACACCTATATCCACTCAACTCTTTGGGGATGACCTCAACAAAGAAGTAGAGGACTTGACCAAGGCCAATAAACTCGGTAAGAAAGTTACTCCCAATCAACGGGTAGAACCGTACCGAGTCCCATCTGGTGGCTCTCGTGGTTGGCATGGGCGTGGCCGCTTCAATCAACGAGGCCGTACCTCAAGGAACTATGTCCCTTTTTTAGGGGCAGGCAGGGTCAGAACAGGCCCCACAGAACAAACACCAGACTGCCAAGAACCAGCAGTAAACAAGactatcatcgatgatgagatttctaagttccttcagaagggtgtccttaaagtttcaagctatgaaagggatcaagttacttcacccattttcacccggcccaaaaaagacgggtcacacagggttattttcaacttgaagaagctcaatgagtcggtatcccatcatcattttaagatgaataccttggaagaggccataaagttgatgagaccatcgtgttttatgacttccattgatctcaaagatgcatactattctatcccgattgctttcaaacatcaaaagtaccttaaatttatctggaaaaatcagctgtatgcatttactagtttgcccatgggtttgtccagtagtccccgcatcttcactaaagtaatgaagccagttttttccaccttacgcttgaaatttggtcattcgtgtcttggttacatcgatgactccttgtacactgaggacagttatgctgaatgtgaagttgctactcgccatgcagttgagctgttaatttcgttagggtttatgattcacccactaaaatccgcagttgttccaactcaggtcattgaattcctcggttttatcctggactcaaccaacatgacagtgagattaccagacaggaaaattgccaaaatcgcctctctgtgtcaaacattttgtcaagagaacaagtcgtttactattcgtcaagtagcttcgctccttgggtcgttgacatcgtgtttttcggcagttgagtttggtcgcctccattataggaatattgagcgtgacaaagatcaagcattgaagtgtaattttggtaactttgagtctcgaatgagcctgtcagaaaacagtcgcaatgacattaggtggtggttgcttaatgtagagtctgcatacaggagaatccatcacaacaaaccagatgttgttgtgtacactgatgcatcgctaactggttggggggcccatatcgatcatggaaataacactaatggttattggtctcatttagaatctcaaaaacacatcaatgttttagagttactaggggcaaagtttgctctgttgtccctcctgcatgacagcaggggtgttcacattagagttatgtcagacaataccactaccgtgtcttacataaatgctatggggggatgcaagtcactggagtgtaatcgcgtagcacaagatatttggggctgggtaataaccaggaacaattgggtgtcggctgctcacattccaggagctagtaatgttgaagcggatgcgctttcgaggAAGTTTAACCTGGATCTGGAATGGATGTTGTCGCCATACGTTTTCCAGAAAATTGGGTTTTGGTTTGGTGAGCCCTCAATTGACTTATTTGCTAGCCGGAACAATGCTCAGTCACGATGGTCGTCAGGCGAGCTAAACGCCGACCAAACTACGGGCATGGGGAACATGAACAGTGGGCTAGAAGAGATTTATGGCAACAAGCTTGAACTTGCTATTCCGCTGGTTGACAGTTTTCTTTTGGAGATTCCTGATGACCTTTTGTCTCCTCCAAAGTTTGTGCTGGGAAATGAATAA

Transcript

alvinactis_v1_g16188

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	PAX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00292	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001523	Domain	Paired domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-