Detailed information of alvinactis_v1_g1520 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_1:25532420...25548344
NR annotation: XP_031565212.1, tRNA wybutosine-synthesizing protein 4-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O60294tRNA wybutosine-synthesizing protein 4 OS=Homo sapiens OX=9606 GN=LCMT2 PE=1 SV=3
Q5XIA3tRNA wybutosine-synthesizing protein 4 OS=Rattus norvegicus OX=10116 GN=Lcmt2 PE=2 SV=1
Q8BYR1tRNA wybutosine-synthesizing protein 4 OS=Mus musculus OX=10090 GN=Lcmt2 PE=2 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04072LCMLeucine carboxyl methyltransferaseFamilyInterproscan
PF13415Kelch_3Galactose oxidase, central domainRepeatInterproscan
PF13418Kelch_4Galactose oxidase, central domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037293Homologous_superfamilyGalactose oxidase, central domain superfamilyInterproscan
IPR007213FamilyMethyltransferase Ppm1/Ppm2/TcmpInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46529TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008175Molecular FunctiontRNA methyltransferase activityInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan
GO:0031591Biological Processwybutosine biosynthetic processInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0032259Biological ProcessmethylationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15451PPM2, LCMT2, TYW4; tRNA wybutosine-synthesizing protein 4EC:2.1.1.290
EC:2.3.1.231
Transfer RNA biogenesisko03016deepkoala

TOP