Gene detail

Detailed information of alvinactis_v1_g14964 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g14964	ELONGATION FACTOR TU-RELATED	chr_7	15914933	15938053	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g14964

ATGGAGACCTTTGTAGGATTGTTTGAGGGATCAACAAGAAATGGCGGCAAAGGAAACATCGACAACGAACAAGAACCGATGCCTGATGTTCTTCCACCAGAGGCTGAGGAAGGGAATGTCGAATATAAGTTGAAACTGGTCAACCCATCAGAGTCCAGGCTAATTCATCTTGTCACTCAAATGAAATGGAGACTCCAGGAGGGTCAGGGGGAGGCAATCTATGAGATTGGCGTTGAGGACAATGGTGCTGTTGTAGGTCTTCCCGAAAAGGAGCTTCAAGCCTCTTTGAAGACTCTGGACCTCATGGCATCAAAACTTGGTGCTGCTACATCAGTGTTACGACGTCAGTGTATTGATACTTCTGATGCATCTCGACATGTAGCAGAAGTGTTAGTTCGACAAATACCCGATGACCAGCAATTTATTGACATACGAATGGCAGTTCTTGGAAATGTAGAGTCAGGAAAAAGTACATTACTGGGTGTCTTGACGTATGATGAATTGGACAATGGTCATGGACGTGCTAGACTCAATCTCTTCCGTCATTTACATGAGATTCAGTCTGGAAGAACTTCAAGTATCAGCCATGAAATCTTAGGGTTTAGTAGCAGTGGAGAGGTAATTAATTACAGTGAGTCCAGGTCAGCAGAAGACATCTGTGAACAGTCCAGTAAACTAATCACTTTCATTGACCTTGCTGGACACCACAAATACATGAAGACTACCATCTTTGGTCTGACAGGATATTCACCTGACTTTGCTATGCTCCTTATTGCTGGAAACTCAGGCATAGTTGGCACTACCAAAGAGCACCTTGGTTTGACTATGGCCCTACGAGTTCCTACTTATGTCGTGATAACAAAGATTGATGTCTGCACCCCTGCGATGATCCAGAGAACTGTTACGATTGTCGAACGCATCCTCAAGTCACCAGGGTGCAATAAAGTACCACTCAGAGTCCAGACAGAAGACGATGCTGTTGTGGCAGTGCAGAATTTTGCCTCCCATCAAATCACTCCAATATTCACAGTATCCTGTGTGACGGGAGAAAACTTAGACCTCCTGAAAAAGTTTCTCAACATTCTTCAACCCACTACAACCAGTGCTGACAAGGAGAAGCTTGCTCAGGCACCGACGCAATATAAGATTGATGAAACTTTCAATGTGCCTGGAACTGGTCCTGTTGTGTTGGGGACGCTGACAAGTGGTATCATGCGGGAAGGCGATAAGCTTGTGGTAGGACCCCTCTACTCTGGTCAGTTTGACTCAGTGCAAGTAACATCACTAAAGCGCAATAGAGCTTCTTGTCGTGTAGTACGTGCTGGCCAGTCTGCTTCTGTTGCCTTGAAGGGAATTGAAAGACACATGCTACGACGGGGGATGGTATTGGCTGATCCTCAGCTCAACCCTCGTGCTTGCCTGGTTTTCTGGGCCGAGATCTACTTACTATTCCATCATACATCGATCCACAAAAGGTTCCAGTCCACTGTATATATAGGGAATGTGATACAGAATGCCATCATTATAGACATGAATAAGacatacacaataactcccttcgaaggaaaaccgcgagatgatatactgggactaccacacacagtcgatggttacgaggaagctaaacgtattctgaagtcgaactatggaaaggacataaaggtacacaaggcgttgataaagaagctagaagaattgcctactatcacgaaaaccaagctggcagacatccacgagttctacaacacgttagcacgagtggtccacacgttggtgacaatgaaaaagatcgaaacagtacagagccacatttacgctatttttgacaagcttggacccatccgcgaggcgattgtgcagaaagagaataactgggaggaatggaaactcgaggatttagtggaacatttgcgacgatacatggatagaaatcccctgacagatcgtgaaaccccgaaacacattgcaagcccccacgaatatcctgataagaggcgtggtgaaagattattgtttgtaaatagtggaaaagagaagagaaagataaacacgtgtgtgtattgtgaaagtgccaatcaccgaagcagcgaatgtaccaaggttcttgacatagcgagtcgaaaggaagtattgaaaaggaacagattatgctataattgtaccggaagtggacatatggcatccaagtgcagatcaggcgaccaagctacccacaaagaaagcacagaaaagtctatgggagtcttggagccgggcaagtacatgtgtagtactctacaccccactgttatggccaagatcaacggcatcgatgctaggattatgatggacagtggtgccagcagttcatatatctgcacagagttacttactaaattaaggatgagacctaagcgctaccagaagaaaatcatcgaacagatgtatggaacagttcagaagaagaagaaacatcgccgcttgtcccatttacgatttagcgaagagaacgcagttggagaagtatttccagttcatgtaatactgggagtagccgactatcaacgaatcaagactacggagccaccagtacttggaaagaacactgacaaaaaccctggtgttgagcttaccatgctaggatggatgatacaggaaggcatcaacacccacacatcagatttagagcgcactttctttctcaactcgggtgttgaggaattcaacaaactgtgttcactggaagtacttggagtcgcagatgaggttcccagcaaagagaacgagttcttgaacgaagctgaatcaaccaaaatgcgcatcgtctacgactgctcaaccaaggcagatttatctctaccatctctcaatgactgtctcgaggttggaccaccgttgcagccattgcttttcgacgtattgcttcgtaacaggatgaaagagttctgtctgacgggtgatgttaagcaagcattcttacatattgaagtggaccccatcgatagggacgcacagaggttactgtggtacaaggacttagagacgagagaaacagcaatgtatcgttttcctcgtgtgatgtttggatcatttggttctgatgacaagcaagacctcaacaagtttaagcacgaatcgtcagaactcttaggtaaatctggattcgcactacacaaatggcatagcaacgttgttgaactggaggacactgtgaaaatacatgcagaatgtgccgacaacatggatactacctttgccaaacactcagttggtgcgcgcaattctgagaccaagattcttggagtaccatggaacaaggaaagggatgaattttcagttgactttacgaagtgtatcgatcgagccgagaatcagaaagtgactaagcgaactattatctcgacaattaattctgtgtttgatgttcttggactcgtttcaccagtcttgataattgcaaagctattgttcagccaagcgtgcttacttaaacttagctgggatgaggaagtaccgtctgaactgttgaaccaatggacgaaatggatcacagaactgaagaagcacatgtgtttgtctgtgccgagatgttgcatctttcaatccaaggacagacgctgtacatacattcacgggttttctgatgctagtaaacaagctgtgagcgctgtagtctatgtggttgtgaaagcttcggacggctcatcatcgcaaaatctactggtgtcaaagtcgagggttgcgccaaagggactgacaataccacgtttggagcttgtcggagcacatctacttgcaaatcttatttcacatgtcacgcaagccctaaggaactatgagtttgagagaatctatggatggacagacagtacaacagtcttgtattggttacgtaacaaaggaacttggtcaaggtatgtacgcaacagagtgcagaaggtcagagaagtagacttcatcaactggggctacgttccatctgaagagaatcctattgaccaagggacaagaggtgtctatccagctcatttgacctcattctggttccatggaccaagttggcttccgaaccgacaacgagtggccaaagcagcctga

Transcript

alvinactis_v1_g14964

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF03564	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR005312	Family	Protein of unknown function DUF1759	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035531	Domain	GTP binding protein 1-like, GTP-binding domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050055	Family	Elongation factor Tu GTPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43721	ELONGATION FACTOR TU-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-