Gene detail

Detailed information of alvinactis_v1_g14359 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g14359	RBP-RELATED	chr_7	6301649	6329604	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g14359

atgcgagagagtgcaacggccgagcggggactgtggaagagtctaCATCAACCCAACATGGCGGCCGAGAGTGCAATTTCGTCGTTTTCTGTCGGGCAAATTTCCCAGCTTTTATCCAAGTCCCGTAAACGAAAACAGGACACCGAAGAGAACAGTGGTCTAAAAAGTTTATTTGGGACGAGTTTCACCGAGCAACCTGTGTTTGTGGCTGTTAATGAGAAGAAAAAGAAAAAGAAGGTTTCTGAAGAGGGAACAGCATTGAAAAAGAAAAAATCAGATGTTTTGGAAACAGGTGACCGTAATAAAGATTCTGATGACGACGACGACAATGAAAATGTAAAACTAAAACCAAAGAAAACCAAAGAAGATCCAGAGAGACTCAACAGAACAATCTTTGTCGGCCATGTTCCTGTGACGCTTAACAAAAAGGATTTTAAGAAGTTGTTTGATAAATATGGTGAAGTGGAAAGTGTGAGATTTCGGTCTGCTGCACTTGCCAAGCCTACCATGTCAAGAACAGTTGGCATGAAAAGAAAAGAATACCATAAAGACAGACAGACATTAAATGGCTATGTGGTTTTCAAAGACAAAAGCTCTGCTGTAGATGCTCTACAAAGTAATGGTGTCGAGGTTGAAGGTTCTCATCTAAGAGTTGATATGGCTGGTAATGCCAAGGTCCATGATCATTCTAAATCTGTATTTGTTGGTAATCTTTCATTTGGTACTGAAGAAGAACCGTTACGAGAACTATTCAAGGACTGTGGTGAAATTGAATCCGTCAGGTTGATAAGAGACAGTAAAACGAATGTTGGAAAAGGTTTTGGATTTGTGATGTTCAAGAGTAAAGATGCTGTGGGCTTCGCAATTAAATTAAACCAAATCAAACTCAAAGGAAGACCCATCAGAGTGTTTCCCTCATCTGAACACCCCAGCAAAGGTTACAATGTCAAGTTTAAAAAAGGAAGACCTCAAACGCACTCATTTAGTGGAATTCAAGCAATAAAGAATCAGAAAGCCCAGGGATCAGAGGAGCCCCCATTCTTACGAGTAGGCACCGAAGTAAGTGCCAAGTATCGTGGAGCGTTCTGTGAAGCAAGTATAAAGACTATAAAGAAGCATGTGAAATGCAAGATACAGTACAAAGATAACACTACAGCTACACTCACTGATGATGTAGTCAAAGGGGATCTAAAGGTTGGTTCTACGGTTGAGGTTAAAACCCTAGATGGCCGGTTAATGGATGGGGTGATCGTCAAACTCACAGATGCTAGCACCTACACTGTTGTGTTTGATGATGGAGATGAGAGAACTCTTCGTCGATCATCCCTATGTCTTAAAGGAGGGAGACATTTCAACGAAAGCGAGACCCTAGACCATTTACCATTAACAGATCCAGAAAACTTTGGTACCCCAGTCATGCAGAATGGAAAGAAGAGAAAGAAAAGACGACCCAGCACTCAACTGTCAAGTTTTGATGATTCTGACAAGGAAGAAAGTTCCCCTGTACCAAGCAAAAAGAAATGTTTATATAACGATAGCATCGTAGGCAAGGTTGTAGTTGTTGAACGTGGAGCAAGGAGGAAGTCACACTGGTTTCCTGCATTGGGAGTAAGCCCCAGCCAAGAGAACTTGGTTCACATCAAGTCCAAGGATCACTGCCTTGCTCGGTCTTTCAAAGATGGAAACTATCACGTAATTAGTATCAAGGATACCAAAGAGTTCTCCAAAGATCAAGAACCTGTAAGCAGTTCCCTAAAGTCAGACAGTAGAAATAATAAACCAGCCGTGGAGCGTGCTGTAGCTTATTTAGAGACTGGACGAGTTCCGGCAACATGGGAAGGAAGCAAATCTGAAGTTATCACTTATGATGAAACTGATGATGAAACTAGTAAAAAGCATACATTAAGGTTAACAAAAGCTGCATCATCtgatgatgacaatgatgagtgtgatgatgatgatgCCAAAAGGGAGGCATTTGCAGAGAAACTGCAAATATTTATGGAAAAACAAGGTACTCCTATTGTGAGAAACCCAGTACTTGGAAACCAAGATCTTGACCTGCGCAAACTGTATTTATTTGTTACTGACGCAGGAGGAATGGATGAGGTTACCAAGAAACAAGAGTGGAGAAATATATATTCTAAGATGGGTATCGCTATTATGCCACCTAGTGCATCACACCATATCAAGATGGCTTATAAAAAATATCTTCATCCTTATGAACTTCATGAATTGACCTGTGGCACATCAAAGGACAACAGTGATGATGATAAGTCAGATGATGTTTCCAAAAGAGATAGAAGTTCACACGGAAGAACGAGACATGAAAGAAACTCAAAATCATTGTCTAGAGCTGCAGAGAAACCAGAGAAACCTGATAAACCTGTAGATAAACGGGCCAAACCAGTCAGTACAGACGTGGCCGAAAAGTCCAATAACTCCAAACCAGCTCCAGCACCATCGAATAAACCCAGACGAACTAGTACATCTAGTAAGCCCACAGctaaacaatctgtagcatcacctaaacaatctgtagcatcacctaCTTCTAATAAGCCTACTAGTAAACCAGCCTTACCAGTATCGCCACCTAGTAAGCCTAATAAGCTGTCACTTCCAAGCACTTTCAGCTCTCCACCCAGCAAGCAAGTCACCACTCCAACAGGCAAAGCATCTAAGTCTCTTTCCAAGCAATCGTCTAAATCATCAACTCCTGACAGTAGCAAAGAACTTTTAGAAGACGTTGACCATGTATATGTGAAAGTAGAAACTGATAGTGAATGTAAGAACGGAGCCGAAGTCAAAACTGTCGTGAAACAGGAAGACGAGCATATAGATGAACAAAGAAGCTACAAACGAGAAGATAGTTTAGAGTCTGATGTTGACGTCGATGAAGAGGTGACATCTCCTGATTCAGAGCTTGCAGTCGATGTTGTAAATAGCCCTGGTTGTATGTCTGACACTAGTGAGTCAAAGTCAGACACACGGTCTGATTTTGGTACTGACGAGCCCTTAGAATGTATTGTGGGAGACAAAATTCAAGTCAAATATGGACGAGGAAGGAATAGAAGACTCTATGAAGCAAAGATAGTAACAGTAGATCCCGATGCAGAAGAAGGTCTTCTATACCAAATTCATTACACTGGTTGGAATATGAGGTATGATGAGTGGATTAGCCCAGACCGTATTTTAGGCAAAAGTAGTAAGCTATCAAAGAAGAAAGGCTTTGGTGTAAAAGAATTTCAGAAATCTAAGCTTCCACCTAAACCAATTGGGAAACAATTTGTACGATCTCAAAGTAAAAGAGGAACAAAAAGTCCTTCGCCAGCCAGCCCTGGGGACAACAGCAACCCTAGCGACACTAAACCACCACACACTAATGGGAACAAGCCATCACCACGATCATCACCACCACTTCAGCAGATAGATTCTCCAACGTCTGCTAATCCAGCAGCCAAGAATGGCACCTGTACTAGAAGGACAAGGTCGGATAGGAATTCTTTCTCTTCTAATGGAACAGATGAAGCTGTTAAAAGCCCACCCTCAAAAAGAAGACAAAAATCTCTTACTCCAGAACCACCAGAAGATGACAATACTACTGACAAATCAAAAGAGAATCCAACAACTGCATCGGTTGAGGAAGCTAGGGAGAATCACGAAGACTACAATGAGACTACAGAGCTGTTGATAAAGACAGAAAATGTACAAATTGAAAGCCCTGATGAGGATGTAGGAAGTGGTGACCTTCCTCACCACATCAAGGTTGAGCCAAAATCTAATGAACTTGTCAAATCAAATGCGAGGAACAATCTAACCTCCAAACTTAAGAATTGGTCCAAACTCCCTAATGGTCTCATTAGCTATAGCTCCTCTGAGTCAGGCAGTCCTGAGCATTCGGCTTCAGAAAATGATGTTGAACCAGCTTCTAAGAAAATGAAAGTTGGAAAGGACAAAGAAATAGGAAAGGAAGAGATTGAGAACTTACTGAACACAGATGTAGAGGGTAAAGCTCCCATTTCAGCGCCGCACTCTGAGGGCAGTTGCAGTTCAGATGACCAGCATGTTAGTGTGTGTCCTGATCAGGATGACAGACAGATGAATTCTGCACCAGTGGATAGTGAACAGAATGCTGATTCAGAAGGAAAAGGTGAAACAAGGTCAAATTCTTCAGGACCTGACAGTAGTAAAGAAGAAAAGGCTACCAACCAAGAGGATGATAAATCAGAAAAGAAAGATAGTGATACTCATGGAAAACAACCTCGCAAAAGAAAAGAAAGAAAGCGACATAGACATCATTCTGTGAATGAAAATAGCAATGATGGTTGCAGTTCAAATGCAGCTAATTCTCCTTCTTCAAAGGGATCCCCAACCAGACCTAAAATATCTTTCAGTGCTGATTTAGAATCAATTAAATCCATGGAAGATGGGTCTGAACGCGTACGTCTCTTACAATTGAAAATAAACGAAATGAGAAAAATATATGGATCCCTAAAAGCAGAGGTAGCAAGCATAGATAGGAAACGAAAGAAGTTAAGGAAAAAACGAGAGGAGAACTCTGCTTCATCAGCACACGATAGCAAATCTACTTCAAACTGTGTTCCATCCAGCCCCACTACATTGGAATGCAGATAG

Transcript

alvinactis_v1_g14359

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ARID

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01388	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan
PF08169	RBB1NT	RBB1NT (NUC162) domain	Domain	Interproscan
PF11717	Tudor-knot	RNA binding activity-knot of a chromodomain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001606	Domain	ARID DNA-binding domain	Interproscan
IPR002999	Domain	Tudor domain	Interproscan
IPR012603	Domain	ARID4A/B, PWWP domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR025995	Domain	RNA binding activity-knot of a chromodomain	Interproscan
IPR034221	Domain	RBM34, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036431	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR051232	Family	AT-rich Interactive Domain/SWI1 Chromatin Remodeling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13964	RBP-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-