Gene detail

Detailed information of alvinactis_v1_g1431 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g1431	CONTACTIN 5	chr_1	24130298	24149232	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g1431

ATGTTTTCCTCCAAGGCGAAGCACTTTCACTCACCTGCAATTCGAGTGCCAATCCCGCCCAGTGTAGAATACTTTTCTATCAAGGTAACACGCTATTGGCTAATGAGACAAGCAGAGACATTCTCGTGTGTGGCGAGCAATGCAGATGGGGATGGACCAAGAACTAATCTTAGTGTGACCGTTCAAGTATTACCAAAGTTCACGATAGAGTCAGTTATGAGCGATAACGTCGCTACACCCGTTCGAGTTGCCGTTGCCACACAAGTAGGAAGGAGTCTGCTGCTAAACTGTTCTGCAACAGGATGCCCAACACCTAACGTCACGCGATGGACAAAGCAGGGACGAGTTGGCTCTCTGGTGACTGGGAACGACCGGATGTTGAAGTACGCTTTTAATGCGGTGAAAAAAGAAGACGCGGGAAATTACACCTGTACCGCTGACAATGGGATTGCGGGCGGTCCTTTTACCAGTACGATTTTCGTTGACGTTCAATACAAACCAGAGAACACAACGATCTCAGTCCACAAAATCAGCAAGACCTTTGTGAAGGGAGACGACGTTAATGTCAAGTGTAAATCAGTAGCAAACCCTTCCCAATGCACCATGTTTTTCTATCAAGGCAGCACTTTTAAAGGAAGCTTTAACAGCAAGTCGTGCTCCCAGACGTATGTGTATAAAAGCATTGATGGGTGTGGCGTGGAACAACTTTCATGTTATACATCgaatatcgtggggagtggtcctaggaagcaggtcgatgtgactattaacgCACCCCCAACAATAAAATCAATATCAGTAAGTAACAACGTGGTCATGCCAGTAGGCACTGCGTTAAACCTTACGTGTACTGTGACTGGATGTCCAACACCGACCATCAGGTGGTCAAAGTCGGGTGTCGTCACTGACATTACATCTGGTGAAACCCTAAACTTGGTGCACAGTTTTCCTGACGGTTTACAGAAGGGCGACACTGGGACGTACAAATGCACAGCTGAAAATCGTTTTGGAAGTAGTGTTGGACTAGCATCGAAGACAATCTACCTGAATGTCACATATAAACCCATTATTACGCTATCAAAGACTGCCATCACACTGAGCACAAACCAGCAGCTCAACATAACGTGTAAAGTTGATGGCAATCCACCGTCTGATATCGTATGGATTCGAAACCAAACCATTATAGCACGAGGACAGAGCCTGAGATTGACCGCCGAGGCAAGTTTGCCTGGAGATTATATATGCCGAGCAAATAACACAGTGGGATCAACAACAATGAAGGCAGTAGTAACTGTAAAAGCCTGTGATAATCACAAATGCCAACACAAGTCAACCTGCATGCCTCGAGGTACTACATATCAATGTCAGTGTAGCAGAGGATATATTGGTCGATTCTGTGAGAATACAGATCTTCTCAGCGCCATATTTAGAACAACATTGGTTATTACTTCCCATGCGTGGATAGAGGACTACAGCAAACCACAAAGTGATGCATTCGTATCTTTGGGAAAGAAAATTTGTCTCGAGATGCGTAAGATTTTCGAGAGATCTAATTTGGTTATTTTGAGTTGTAAAATAATGTCTTTCAGAGAAGGAAGCATTATCGCTCAAACAGAACTGAAGTTTAACCAGACAAAGTATCTCAGTGAAATTGTGAATATATTTCAAAATGCGACTAGCAACAACGAACTTGGGGAGTTCACGATACAATCGTCATCACTTAAAGTCATTGCTTTCAATGCTTGCCTAGATAAACCATGCGAAAATGATGGAAAGTGTATCGTTAGTGGAGATGGATATAAATGCGAATGTGAATTATTCAGATCAGGAAAACATTGTGAAAAGGGTATAAGTCTAGCTGCTGGTGTTATACTAATCATCCTTGCTTGTCTCATCGTTTTGTTGTTCATCGTCGCCATTATCATTTATTGCTGCTGTCATAGAAAAGGCGGATCCTATAGCACAGACGCCAGGCCTTTCGGAACAGAATTGACGTCAGCTAAAATACGAGATGACGACCATCCAATGGCTGCCGATAATAATATAAATGTGAGAGATGATGATGCcgtgaatgcccacaattatgctaatgtcggcgccgacgtgaatgcccacaattatgctaatgtcggcgccgacgtgaatgcccacaattatgctaatgtcggcgccgacgtgaatgccAAGCGTGGAGCAGTCGTGAATGGCAAAGATGGAGAACGTGTTGGTGTCAAAGATGGCAAGAATGTAAATGCTAAATATGGCGTTATTGCCCAAGATGGCGTCCCCGACAAAGATGGCTTCCCTAGTGTTAGTGACAAAGTTGGCATAGAAGTGAAGAATGACCAAGCTGTCGAACCCAAAGGTGTTGTAACTGTTAGAGCTGATGTTAACAATGTTGAAGCAGCAAATGTCAAAGACGATAAAACAGTCGTTGTTGATGCCAGAGATGATGAAGCTGTCGAACCCAAAGCCAAAGATGGTCTAACTGTTAGAGCTGATGTTAACAACGTTGAAGCAGCGAATGTCAAAGACGATAAAACAGTTATTGATGTTGGGGATGCCGACGAATCTGTCGAAGCCAAAGATAAAGGTATCGAAGGCGTGAAAGACGATGAAACTGTCAAAGAAGGCAAAGACGACGAAAGTGCTAAAGATGATGAAAAGGTCGATGGAAAAGATCATGACGAAGATGGTGATCAGAAAGAAGTGAACAGCAGCGAACGTGATGATCGCAAAGCCGACAAACCAACTTACTGTGGGTTTAAGAAAGGATTTTTGAATTCCTAG

Transcript

alvinactis_v1_g1431

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF01390	SEA	SEA domain	Family	Interproscan
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000082	Domain	SEA domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036364	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-