Gene detail

Detailed information of alvinactis_v1_g13997 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g13997	SETA BINDING PROTEIN 1	chr_7	1783977	1796942	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g13997

ATGAGTTTTCTAAGCAGTGAAATTATTACGTTGAATGTTGGAGGCAAACGTTTTTCTACATCCAAACAGACATTATCATGGATCTCAGACTCTTTCTTTTCAAGTTTGATGAGTGGCAGAATCTCTTCATTACGAGATGAGACTGGAGCTATATTTATTGACAGAGACCCAGAAGCATTTGCTCCCATATTAAACTTTCTTAGAACCAAAGAACTTGATCCAAGGGGGCTTGACTTGAGAGTGATCAAACATGAAGCAGAATTTTATGGAATTACTCCACTTGTCAAGAGGATCAATCTGTGTGAAGAGGTCTCATGTTCCAAGTGTGGTGATGTTCTGTTTCACGGCTACCTTCATCCTCCAGAACTCCCTTTACCATCACGGGAGAGTTTACTCACCATTTACAGAAGAAGTTCCAGTTGTAGCACAGCAAGCAGTTCGACAAGGGAGACTATCGTAGCTAAAGAACCTAGTATAAGAACATCTACATGTGAACCTAATTATCCTATTGAAATAAACCCCAGAAAAGCTTTGATTGTTATGGGACATCACGGTGTGATTGCTGTAGCTTTTGCTCATTGTATCATTTGCTACAAGTTAAAGGATACAGCAGAGTGGATCATGGTGTTCATATCACCATACTTAGAGAACTGTGTCGAGAAGATGGCTCTTAATGCTAAAGTGTCGGCAGGATCGCTAGGTGATAGAATGGTGGCTGTGTCGTCAGGCAATCATATTAGACTGTGGAGTTTTACACATAATGATGGAGGATATGTCAAATTTGAAATTGGTACTTTTGATCTCAGTGTACAAGTAGATGCATTATTCTTCATTGGTAGTCAGTTAGTAGCAACAAGTCATACAGGAAAGATTGGTGTGTGGAATTCAATGTCACAGCATTGGCAGATCCAAGACGTGGTACCCATTACTAGCTATGATAAAGCTGGGTACTTCCTACTACTGGGGTGTTCAAATGGATCTATTTATTATATTGATATGCAGAAGTTTCCTCTACGTATGAAGGACAATGATCTATTGGTTACTGAGCTGTACAAAGACCCTAACGGCGATATGGTGACAGCATTAAGTGTATACCTGACACCCAAAACATgtttaagtggtaactggATTGAAATAGCCTATGGTACAAGTGCTGGTACTGTGCGTGTTATAGTTCAACATCCAGAGACCGTAGGACATGGTCCGCAGCTCTTCCAGACATTTACAGTACACCGCAGTCCTGTAGTACGTGTTATGCTGAGTGAGAAACACCTTGTGTCAGTCTGTGCAGAGTATAACCATGTACGTACATGGAATGTAACTCGTTTTAGAGGGATGATCTCTACACAACCAGGATCTACACCATTGGCTTCCTTTAATGTCGTCTCACTGGAGGAGACTGAGACGCATCCTAGTTATTCAGCAGGCAACTCATTAGgtccttttggtgatcgtgatgatCAACAAGTCTTTATTCAGAAAATCGTTCCTGATACAGATCAAGTACATGTTAGACTTTCATCCACTGGGAAAAGAATATGTACAATTCGTTCAGTCGATGGTAACCATATTAGTTGTTATTGTGTACACGAGTGTGATGGTTCCAGTAGAATAGGATCGCGACCCAGACGATATCTTATCACAGGACATGATAATGGAAGCATACAGATGTGGGACTTGACAACTGCACTTGAGCAAGCTGGCACAATCCCAGgccctagtgaaggagaactgatgaAGACCTTGGAGCAGTGTGACCTTAGTGCATCACGATGTACCACGCCCTCTCTATCGCCCGCGACGTCCTTACTTCAGACCAACCTACAGGAATCTCGTATCAAGCTCTCTCTGTCGTGTCCGAGTCTCACGGAAGAAGAAACTTCAGAGTCTGGATCGATTCGAAGTGAAGCAAATTCAAGACAAAAACGTaaagaatcatgcagatgcctcgagcgggattcgaacccacgacaccccgatttcatgacaggtgctctacccactgagctaccgaggcaactacaatggcgtggagttcaaattagctcaaagacgctgattttaaccgaacatttgctcccaggcctcacggaactgggaattgcttctgtaatgacatacgaatcgtatcacgcagtcacagtagtcatattagtaaagtacattaatggcttaactgcatcacgcagtCACATTAAATCAGAATAA

Transcript

alvinactis_v1_g13997

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|BTB
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02214	BTB_2	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR003131	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR047876	Family	SHKBP1/KCTD3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15859	SETA BINDING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0051260	Biological Process	protein homooligomerization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-