Gene detail

Detailed information of alvinactis_v1_g13907 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g13907	60S RIBOSOMAL PROTEIN L12	chr_7	836369	841623	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g13907

ATGAGTGTTTCGAAACACGCAAAAAAGTCTAACAACATCAGACAAAACAAAGGCCCTATTCATCGTGCTGGTCACCAGGGAACTGAAAAAACTGCAGAAAATATTTTTAGAAAATTTCGAAATGATTTTATGGGATTTGAAATCAGCAAAAACGAAAGGTTCAAAGACAGAACTTCCTCTGCCGAAACTTCACGTAACAATGTCACTTCAAAGAACAAAAGTAATAGGATTTCTCAGCAAGAAATACTGCGTAATCTGAGAAAACAATGGAAACGCTATGCGGACATAAGTTTAGACTGGAAGGGAATATTACGTCCATGTCATTCAGACATGGTATGGACATTCAACAGAACGTCTGCTGACCAGCAAACTAGTCGAGTGACTACTACTATCACTAACAAGAACATTAAACCCGCTGGGGAATTCAGCTCAATATTAATTCAATCAAGGACTGCCAATGGTGATGTTAAGACCACTGGAGGCGACGCGTGGAGAGTTTATATTAGAGGACCATCAGCTCTTGTTGCTAAGGTTACCGATCATAACAATGGTACTTATGAAGCTCTATTCATAGTCATGGAGCCTGGTAACTACACAGTACAATTCATATTGGACTTTAGCTTATGTGATGGCTTACGAGATCCTCCAAGTGACTGGTTTATTCAAGGCAATGCGCAAGGTAAATACCAAAAAGATAATTTACTTGGTCCATTGAAAGATTTCTTGCTTCAACATCTCGAGCCCTTGATGATCAACGTACCAAACGCTCGTATCGTCTTTGCAGAAGGAACACGTAGTATTGTTGATGTGACGTGCATACAGAGATGTCGTTCACTATGGAACCCTGTTGGACGATGGGTCAATGGTAATACTTGGATCCCATATTTCAGTGCTGAACCCATGTCGTGGCCACGTGTCCATCATGACGTCACACCATCTGGAATCCTGTGGATTTACGGCGATTCAGTGGCCAAGAACCTGGTTCTATCAGCACGAAAACGAGCACTGTGCAACCAACTGTACAAGCGATGTGAATTCAGTTACAATTGGATCTATCCAGTACTTGCTGGGGAGCAAAGAGCAATCATACTTGATGATAACCTTGACTTTGAAGAAGACCGTGTGCTTAACACGATGAGGGAGCTACTAACACACCCAGATATGAACGACAATCCAAACAGTACACTTTTGTTAAACATTGGGCTTCATTTTGTAATGACATTAAACTTTACAACTTATCAAAAGTTCATAGATCACGTGATTTATATGTTGAGCCGTCCTGGGGACGACTTTGAGTCATGGTACAAGGCCAAGGTGATCTGGAAGACTACCACAGCTATTTATAAAGAAAACGCAAAGGAAAAAAACTCTACGCACTTCAGGTTTCTAACTTCTCAAAGAATCTTACTCTTCAATGCTTACTCGACGTGGGCGATGTGCAAGGCAGGGATAACTGTGGTAGATGTTCATCCAATCACTGATTCATATCCATACGGTCCAATAGATGTCGTCCATTACTACGGCTTTGTTACTTATACATTGGAACAAAGACTTGAACAATATAAACTTAATGGACAACAAGGCGATCAATTAACAAAGATGTTCGTAACCACAGGCTCACAGCATAAAATGGCGGCCAAAAATGTGAGTGGGGTACTACGAACATTCATCAATGCTGGAAAAGCGTCTCCTTCGCCGCCACTGGGACCAGCGTTAGGTCAGAGAGGGATCAACATTCAACAGTTTTGTAAAGACTTCAACGATAAAACAAGGCACATCAAAGAAGGGATTCCAATACCAACAGTTATTCATTATAAGGGAGATAGGACATTTTCATTTGAGACGTCAACTCCAACCGTCTCCTATTTTCTCAAATCAGCTGCTGGAATTGAAAAGGGAGCTCAAAAACCAGGAAGAGAAGTTGCTGGAACTGTGACACTGAAACAGATTTATGAAATAGCAAAGATTAAAAAAGAAGACAAAGCATTTAGAAATGTTCCTCTAGAAAGTGTCTGTAAGACCATCATGGGTTCTGCCAGAAGTATTGGGATAGAAATCATTACAGGACAGGATACACAAAACCCTTCTGGAAAATAG

Transcript

alvinactis_v1_g13907

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00298	Ribosomal_L11	Ribosomal protein L11, RNA binding domain	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF03946	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000911	Family	Ribosomal protein uL11	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR006519	Family	Large ribosomal subunit protein uL11, bacterial-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR020783	Domain	Large ribosomal subunit protein uL11, C-terminal	Interproscan
IPR020784	Domain	Large ribosomal subunit protein uL11, N-terminal	Interproscan
IPR036769	Homologous_superfamily	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Interproscan
IPR036796	Homologous_superfamily	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11661	60S RIBOSOMAL PROTEIN L12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005762	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015934	Cellular Component	large ribosomal subunit	Interproscan
GO:0070180	Molecular Function	large ribosomal subunit rRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-