Gene detail

Detailed information of alvinactis_v1_g13194 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g13194	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	chr_6	17489755	17492225	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g13194

atggatactttgcattctatcctgaagatgatctctcagggggattatatggcatctttggatcttaagcatgcctattataccattcccattgccccggagcaaaggcggtttttgaagtttctttggcttggagagttgtacgcttttaaggctttacctatggggttatccagttcccccagaatttttaccaaagtcatgaaagcacctttggctctcttaagacagaaggggtgtactattgctggttatatagatgaccttttcttgcaaggtagtgattttcaggaatgtgtctccaatttaagggaagctattgatctttttctccagcttgggttcagcttacacccggaaaaatcggtcttattgccatctcagacattgatattcctgggatttatattagatacggtttccatgacggttactttaacccaaaagaagaaggacaagttgaaatccctttgtctcgaagccttaaatggggaggtttttccaattaggtttatagcccaggttattggtaaaattgtgtcctctctgccaggagttgaatttggtaaattacactatcgtaaccttgaacgggataagattcaagcattagttgtcagcaagggggattatgagggccttatgcatctgtctgaatcagctacgaatgagctgcaatggtggcttgataatgtgatgtatgcctcccgtagaattcaacattctacaagttcctatgtttttcagactgatgccagcggcagtggctggggcgctacatgtacaacagatgtttctcgacaatctcaaggtgtttggtcacaggagcaaagatgtttgcatattaatgtaagagaattgtatgttgtttttatttgcttaactatcttttgcaacaacatgactggggtccatgtcaggtttgaacttgataatcagacagcggttacctatcttaatcagatgggagggagcaagtctaaatcttgtgacacagtagctagaaagatctgggattggagtattcagagagacatatggttgagtgcagttcatattccaggcgcctctaatgtcatagctgatacgttgtccagaaagcactactcagatCATGAGTGGATGTTGAATCAGGATTTCTTCTCTAAGCTCTGTGTGTTGTTCCCCAAGTTTAGCATTGACCTCTTTGCGACAACACTTAATTGTCGTTTACCTAGATATGCGTCCTGGAGACCTGATCCTCATGCTGCTTTTGTGGATGCCTTTAGTAGATCATGGCAAAATGAATATTTTTATGCATTCCCACCTTTCAGCTTGATCGCACGTTGCCTGGACAAAGTGGAGGCAGAACATGCAGAAGGGGTTCTGGTTGTGCCAGCTTGGGCCACTCAGACTTGGTATACCCGAATCCTCCGGATGAAACAGTACACAGTGTATCTTAAGAAATGGGCTGCATTCTGTAGTTCAAGGAAAGTTGCTCCATATTGCCCGGATTTAACAGATGTGCTTGAATTCCTCCATACCCTGCATCACCTGTCGTACTCTGCTCTCAACAGTGCCAGGTCAGCTCTGTCATGTATTATTTCATTGAATGGAATGCCTGTTGGCCAACATCCTGTTGTGTGTCGTTTTTTGAAAGGCTCTTTTGAGCAAAAACCACCATCTAACAGATATTATGGCATTTGGGATGTCAACCAAGTTTTGCAGTTTTTGAAAGCATTCACACCTAACAGTTGTTTGACCCTAAAGGAACTAACTTTGAAATTGGCAACTTTATTGGCTTTAGTCACCATTCAAAGAAAGCAAACTCTATTACAACTTGATATTAGTGATGAATATCTGAAGAAGTCTACAGATGAATACATATTTGTACTCGGTAAACATGTCAAACAGAGTAGGCCAAACTACCCTGTTCCACCAGTTATTATACCTAAGTATTCTCCAGATGTAGATATCTGCCCATATGTTTGTTTAGAGGACTACATTGAACGAACTAAGACCTTACGACTCAACAGTTGTCTGTTCATTTCCACAATAAAGCCTCACAAGGCAGTCGGGGCTCAGACTATGGCAAGATGGATAAGAACTGTGCTGCAATGGTCTGGCATTGATACAGATCTTTTCAAGCCCCACTCTACTAGACATGCAGCATCGACCGCTGCTTTTCAAGCTGCTGTTCCATTGGACGAGATCCTTAAGAAAGCGGGATGGAGTAGTGCTAAAACCTTTAAGAGGTTTTATTATAAGCATGTCTTAAATGATTCAGAATGCTAA

Transcript

alvinactis_v1_g13194

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00589	Phage_integrase	Phage integrase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002104	Domain	Integrase, catalytic domain	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35617	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-