Gene detail

Detailed information of alvinactis_v1_g12546 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g12546	ROLLING PEBBLES, ISOFORM B	chr_6	8269438	8273730	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g12546

ATGGATCATTTAGCTGGTAAACTAAGCGATTTGTTTGTGGCTGTGCGGGATGGCAATGAACAAGATGTACATGCATTGATTGCATCTGGTGTTGATGTGAATATAACTGATAAACACGGCAAATCACCCTTGTTTTATGCTGTACATTTGAACGACAACTTCGGAACTGCCTATGCCCTTATCAAAGCGATTCATGATGTTAATAGAATTGATGAAGAAGGCAAGACCATTTTATTTTATGCCGTGAAATATGGCAATGATGCGGTTACGGGCGCATTGATTGATGCAGGAGCTGATGTGAACATAACCGATAATCAAGGCCAAACAGCTCTGTTCTATGCTGTCCGATACCACAACAAAGCTACCATGTCTGCTAGAGCTAGTGATGCTACTGTTGTCAACTCAACTGACCAAGAACAAATGGCTTCAAGTTTGTTTGTTGAAGTGAAATATCACAACAACGAAATCATCAACGCATTAATCAATGCTGGGGCAGATGTGAACATGACTGATGCAAAAGGCCAAACTGCATTAGTTTATGCTATTCAGCACAACAAGGATGTAAATGCACAGACATTGATTGATGCTGGGGCAGACGTGAATATACCTGATACAAGAGGCCAAACTGCTTTAATTCACGCTGTACTAGAATCGAAGGAAGGCATCGTTCGAGCACTGGTTAATGCTGGTGCAAATACTGACGTACAAGATGAATATGGAAAAACACCTTTATCTTATGCTATTGAATATCACAATGAAAACATGTTTCGTACGCTTCTTGATGTTGGCGTTGACGTAAATCAAAGAGATGAAAAGAACCAAACGGCTTTATTTCATGTTGCTGCCAGTTATGACGTTGAGGGTACACGGGCTTTGATTGCTGCTGGCGCTGATGTCAACGCAATTGACAATCAGGGCCAAACTGCATTGTTTTCTTCTATGCCTGTTCAGAATGCATATCGGGATGGCACCGAAGAAGTGGCACTCCTGTTAATTAACGCTGGTACTGATGTCAACATTGTTGATAAACACGGCAAAACGGCTTTATTTTATGCTGTTAGACGACCCAGTGAAACAGTGGCATATAATCTGATTGACAGCAAAGCCATCATCGACGCAAGAGATGCTTGGGGTAGAACGCCTCTTTTTTACGCTGCCACAAGATCGTTTTCGTTGGCTCGTGTTCTTCTTACTAAAGGTGCAAACCTCATGTTCACAGACAACTATAACGTTGATATCTTGTCGTTTTATGTTGAATACTGCATAACGAACGGAAGAACATCGGACATTAATGAAATGTTTCAACTTTTTCAACAACATGGAGCTCAAAGACAAACTGTAGTTATGTCGCTTTTAAACACGGTATTTCATCAGGCCTTAAAACACTATAGAATTCAATCAAATCACAAGTCATGGTACCAAGAGTCAATTTTAGAGGCCTTACATCTTGCAATTCAATACACTGCAGAAGACAACGACGGAAGAAACGAAGCAATTGGAATGGTTTCCTTGAAAATGCGTGGCTTTGCTCACCAGAGCAGTACGAATCTACTCTTTGATTTGCTTTCGttactaattgaacttggtgtaaacacaaacagcgctgactcatgtggaaacactgcatttcattacgcagtgtgcctgcccatgttcggcgtgcaacaggaggctgttctcaacatctgctccctcctggaagcgtctggggcaagattgaattccgtaaatcgtgccaaagaaactccattgttgcattgtttgtcgcaattctctcaaagactggctcacatgaaacagtcggtcaaacacgatcacgaacagtggatccctgtagacgtttgccgatttttgctagcgagagatatttcagttgtcggtgaagtatcgcgccagggagaatcagtctttgatgtcattatcaagattttgcaacgaggattaagttcaacacataagccaaagagacaatgcgtaatacatcaggcaatggaactactggaattgttttccaacgcaaataacacaattaagggaaagacagcttcgaaaagtaacaccaagcttcaatcaccacttcacctttgggcatcgcttactctaccctcgagcgctaccacagctcacgagtatactagccccaactatatcacagagcaatacacgtttgagcaattgttgcacacaattctcacccatttattaaactctggagcaagaaagaatgcacgagatgagaatgatgaaacgcctttgcacttgtgcagaactcgatgtgctgtcaagctcttgatagatgctggtgctaatatcaacgatgttgattcagcacaacgaacacctctactcgcggcCGCCAGAAGGTACGAGTCAAGCCGCAACAAGCGACACACAGAGGCAGTAGTCGATGGGCCTGATCGTTTGTACCCAGATGTTTTAGAGGAGCCGCTAATGTTTTGGAAAAATTTATTCCAAGTCGGCCTTGATCTATGGACATGCGACGTAGATGGAGAATCGGTGTTGAGCATGCTGGTTAAAGCAAAGTCCTACAATCTTTCGAAAGCATTGATTGAACTCGCTTGTGAGGAACAGTATTCCAACGTGCTTGAGTCACTTCTGAATGCTATATGCAAGGATAAATCTCTAAGTACCCACTGGAAAGCCAATCTTGTCGAAATGATTTTAAGTTATAGAAAAACTAAGATCGATGTAACTACAGCATTAACATTGTGTTGTCGGAACGTGAAAAAACTTTACGTTTCGAAAAAACGAAATAGTGATGAAACATCCACTTCCATTCACTGGCAAATTGCAGAGCGGCTTCTTCTGTATGGAACCTGCAATCCTGAAAATCCTGATTTCTTGAGGGAGGAGTCGTGCTTGGACATTCCAGGATCGTGTCCACCactcaaagaacttctcacaaagccagtagacattggtaaagccccaaaactcattccatggactcagtcctcagagaagcacgaagacaaactgaccaaagtcgccagacgccaggaatgcaagatggtcgagtcgtattggtatcatcaggaagaggtagccagaggcgcatttggagaagtgtatgcagcattaaacgaacaggacggaagagaagtagccattaaacgaaccgttaaatccctcatgaagcgtcctgaaaccaaacgtgagatcaacaacctcatttctctcgcagactgtggacaagtcgtgcgttatctctctttcttcgaggatgaacacttttcttacatagtcttagaactaatggagggcagtctcgatggtaattttctcaaaaagaaaccacttagcacacgtgaaaagattggtctttgtaaagatgttataatgggattgacgtatttgcatgagcgagaagttttgcatcgcgatctcaagccaagcaatattctgtacaaaaacgaccctaagctgtgtctgaagttagccgactttgggctgagccgttgtatcaacactgtttctaccaccgtgtatggaaccaacgctggtacaagatgctggatagctccagaggtcatcaagtccgcaattcccatcctttccatgtcatctgacatattttcatgtggacttgtcctccattatattctatcaggacaaagacatccattttcgccagctaaaggaacgcctttagaacaaatcactgcaaaagaactcaatgttatcaacaataacatggaaggatgggacgagtcaattccacctgaagccacccaccttgtgaaaaagatgctcgaaagcgatgacaagaagagagcgactgcagcagaggcgctggttcatccaatgttctggtcagacaagaaaaaaatggaacttctcaacgctgttggaaatcagccagagttcgaatgtccacctgctaaaaggaaaccccctttgacgttcgtcgagacggatttgcagtcaaactttcctgcaatagtcaagcatcccacatgggatgatccaggatatgtgaacatgcatacagttttcaccgaaatgtctaaacccataatttcatcgaagggtaaaccaacaccatcgagaaagtatgataccaagtcagtggtcgagttggtgaggtttgtacgaaactcctggcaacacatctcggatggcacccggccaacgcttattagagaactcatcatcaaacactttactttcttggatgaatttccgaaccttgtcatcgaagtcttcaaagctgtaaccactcatggatgggCTAAATCAAGAGGAGAAATCCAGTGCGCCGTGGATGAGTaa

Transcript

alvinactis_v1_g12546

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF06479	Ribonuc_2-5A	Ribonuclease 2-5A	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR010513	Domain	KEN domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR038357	Homologous_superfamily	KEN domain superfamily	Interproscan
IPR050889	Family	Dendritic Spine Regulation and Scaffold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24166	ROLLING PEBBLES, ISOFORM B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004540	Molecular Function	RNA nuclease activity	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-