Gene detail

Detailed information of alvinactis_v1_g12544 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g12544	RAD50	chr_6	8184542	8258442	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g12544

atgattggaagagtcttcttggTATTTAAACACGTAGCCTCTACGATGTCGTCCATTGAGAAGTTGAAGATTTCTGGCATTCGTAGCTACTCCCATGTTGAACCTTCAGTCATCGAATTTTTTAAGCCTCTGACATTGATAGTAGGATCCAATGGTGCAGGAAAGACATCCATTATTGAGTGTCTCAAGTATGTGACAACAGGTGATATGCCACCTGGTAGCAAGAGCTCTTACTTTGTGCATGATCCCAAGGTTGCTGGTGAACAGGAAGTAAAAGGTCAAGTCAAGTTAATGTTCACAGACACAACTCAGAAAACTGTGGTGGTGACAAGAACACTTATATCACAGCAAAAGGGAAAGAAGGTAGAAACTAGAAGCCTAGAGAGTGTCATCAAAAGAGATATTCAAGGAGAGAGGCGAAGTTTAAGCTCAAAGTGTGCTGAAGTCAACCATGAAATGATAACATTCCTTGGAGTTTCCAAAGCTGTTCTTGAGAATGTTATATTCTGTCATCAAGAGGAGTCTAACTGGCCCCTTAGTGAAGGAAAAGCTCTGAAACAAAAGTTTGATGATATTTTTGCAGCCACAAGGTACATTAAAGCCCTTGAAGCCATACGCAAACTTAGGCAAGAACAGACAAAAACAGTTAGTCTTTGTGAGGCAGAATTGAAATACTTAAAAGAAAGCAGGGACAAGGCCCATGAAATTAATGGGGAACTGGAGAAAAGAGAGGGTAAAGTGCAAGCCACAAAGGATTCTATTGTGAAACTAACCGATGCCTTGCAACCTGTAGAGACACGAATGGTAGAACTTGATGATGTTATGCAAGAAGTGAATGAATTGACAAAGGAAATTGAACTGTTGATGTCTAAAAAGGACCAGCTTGCCGACATGGAGAGTGACCTGCAGGAAAAGATCACTGTTATCTTTAAAGGTTCTACAGAAGAGCTACAGAGAATTTACAACGAATTCCAGACTAAAATTGGAGAGAAAAATGGCCTTTTACAGCAGAAAGAAGATGAGCATCACCGTCTGGTTGCTAAGCAACAGGAGCTTGCACGGGACAAAAACAGTGTACTGCTAGAACATGGGAAACTTGAACAGCAAGCACAGAGACATAAAATGAATCTAGAAGAACGTGATGATATGGTTGTGAGTTTGGCCAGTCATTATGGTATTCCTAGATTTGATACAAGTCCGTTCACAGACTCTAGAGTCGACGACTTTATATTAGAACTGAGAACAAATTATGCTGCTTTAGTCGAGGATACCAAACAGCAAAAGAAAGTGTTCACTGAGAAAATTGAAGCAGCACAAAATAAGGTTGATGACATTAAGAGAACTCGAGCTGAATATGGTGAAACAATACGACTTAAGAAGAATATGATGAGGGATAACCAGGTAGACCTCAAGTCTATTGGTCAGGAGCTCAGTAACGTGGATGCATCAGCCCGCAGGCTTAAGTCACTTGACACTGAATTACAGCGTGCAGAAAACGACCTCAAAGAAGCCAAAGAACAGGGGAATGTGGACGACATGAATGCTGAAATTGAGAAACTTCAGAATGATAAACGACAAGTTGACAATGAACTCAGCAGGTTACGAGAAGAACAGACGACGATGCATCTACAATCCACCACGCAGGCTAAACTTGATATGTTGGTGAAGGAAAAAAGTGAGAAAGAAGATAAAATACAAAAGCTAATGGACAAGCACGACGAGGACATCAAGATGTACCTTGGTGGCACACGCACCAGTGAAAGTCTCACAGGTAAACTAAGCCAGTATGTTAAAGCCAAGAGTAAAGAGCTCCACGAAACACAAAACAGAATACAGAGACTGAAACAAGCTCAGTCGGCTAAGAATGCAAACAAGAAGAACATGGAAGACCTGTTAGCAAGTAAACAAGACGAGGCTGAGACATACAAACAGAAACTAAAGGAAGCATGTGGAGACAACGACTACAATACACTCAAAGAACACATCAAAAACCAAATAGATGAATTTAGAGATGACAAGAGTTTGTATGCGTCCATTGAGAGTATCTACAAGAAGTACATTGAAAAACTTCAAGACGAGTCTGTCAAGAGTAAAGGATGCCCTCTGTGTCATCGCTGCTTTGATTCAAACAGACAGGTTAATGAGCTTGTCACAGAGCTCAGTGAAAAAGTCACAAGTCTTCCTGAAAAAAGAGCTAAAAATGAGAGTCGTTTAGAAAGAGAAGAGATGCGATACCAGAATATACTGAACCTTGGACCAATCAAAGACAATCTTGAGAAACTCGAGGCAACGGAGATTCAAGAAACGAAATCCAGAATTACTGACATCTCATCAGAGATAGAGAAAACAGATGCAGACATCATCGAGCTTGAAGATGTGTATAGTATGACAGAGAGCGAGGAGTGCAACGTCAGGGAGATGGAACCCGACATACGTGAAGCTGAAAACATGAAAAAAGGGTTCAAAGATCTGGACAAGAATATCTCACTTCTTCAGTCCAAACTGCATGGGATCGCTCCTGGTCGCACGATGCAGGCGGTAACCAATGAAATCACAGACAGACAAGatcgatcGGAGACCCTTGATCGTCACATTGATCGACGAAGACGAGCTTTGACACAGTTACAGAGACAGATCTCGACACTTGAATCGAATATGCACGACTTGAAATCCCAAAAGCTCCAACTGACTGAACGCTTACAGAGGCGAACACACTTGGAAGGACAGAAAGCAGAACTGACTGCCAAAAACGATGCTCTAGAACGAGAAATCAAGGATGCCGAGGCTCAAGCTCGTCCCATCCAGGCGATGCTTGAAGACCAAGAGAGCAAGAAGTACCAGATCGTATCAGAAAAAGAGGCAATGGAGGAAGAAAACAGAAAAAAGTTGACGGAGATACGAACAAATGGAGATAAACTACGTGATAAAATCAGTGAGATAAAGAAGTATATAAGTCAAGGCAATGAAACTGCCTTACAAGACAACGAAGAAAGGCTAAACAATCTTGAGAACCGTGAAGTTCAAATATTTCAGAAGAAAGAAACTCTATCGTCTAATATAGACTCGTTAAAAGATGATATTTCAAAGCAAGAGATCAGAGCAAGAGATCTCGATGACAACCTGAAGTTAAAGAGTACTCAGAAAGAAATCCAGAACGTAGCAAGAAAGGTTAAGTCTGTTGAAGTAAACTTACGCCGACATGGAGATCAACGGAGTCttatcagCGAAAGATCGAAGCTTCAACGTCAGTCTCACGATATGCGTAAAGAGAAAGCTCAACTCGAAGGAAGACAGAAAGGATACGAGGACGAAATACGGCGATTTCAGACTGAACTTCGTAGTGACATGTACAGAAATGCCGAGGAGAAACACCGTGATAAAGTTATCGAGATGAAGACTACACAGATGGCAAGTGTGGATCTAGACAAATACTACAAAGCTTTAGACAGAGCAATCATGAAGTTTCATAGTCTAAAGATGTCTGAGATCAACAAGATTGTCAAGGAATACTGGAACAATACGTACAAAGGCAACGATATTGACACTATCGAGATTCGATCAGACGAAGAAGAAGGTAGTGGAGCAAGTAAGGCACGAAGAACGTACAACTACAGAGTCGTGATGATTAAAGGCGACACCGCGCTGGACATGAGGGGACGTTGTAGCGCAGGACAAAAGGTCCTGGCATCCCTCATCATCAGGCTGGCACTGGCCGAAACATTCTGTTTGAACTGTGGAATCTTTACTCTGGATGAACCTACGACGAACCTGGACGAGGACAATATCTATAGCTTGGCCGGTCAGCTTGCAAGCATAATACGAACAAGACATGGCCAGAAAAACTTCCAGCTGATCGTCATTACTCACGACGAGAATTTTGTAGACATCCTGGGACGTGCAGACTTTGTCGATCACTACTATAGAATCTTCAAAGACGATAGGGCCGATCCTGAGAGAATCCTGGAGTGTTGTTTGGAAATAACCGCCCCAGATGTTGACACCGATACAAAGCCATCCATAAAGTATATATTCCCTCCAGACTACGAAGACCAGGAAGCTCTCAAGCACATTCCAGGATTTTGCTATCCCTGTATATCCAACTCGGAAGCTGTACAGAATTACACGTTTGTTCTCACTGACATCCAAGGACAATACAGATTTGGTTACTGTCGATATTCTCCCAATGTTAAAACATGTCTTTGTATAGTAAGTTATTTACCATGGTTTGAAACATTTTACATTCTTCTAAATACAATCTCAGAGTTAAAGAAAAAGAAAGAGGAGGGTGATGTAGTTGGTCCTCTACTAGAAAGACTTCTAAAATTATCTCCACCTACACCAGGTTGTAGTATAGTTGTTAAACCTGAGGGGAGCAGCAAGGAATATAAATTTAAAACACCAGATACCTCAAAACTGCCATGCATACCAGAAAATCATAATTTAACAGACTATTATGCTCATATTGAACCATCAAATATGATTCTATTATTTGTTTGTATGTTTTTTGAGAGAAGAATCATTGTCACTTCCAAGAAACTCAGTGTTCTAACAGCATGTACGTATGGCGCCATGTCACTGCTATATCCTATGCATTGGCAACACATGTTTGTTCCTATTGTTCCTCCGCATCTGCTGGATTATTGCTGTGCTCCAATGCCATTTCTTGCTGGTGTACATTCATCTCTCATGCCAATTGTTCGCAAGATGCCACTTGATGATGTTGTCATCTTAGACGCAGACACCAATGAAGTAGAGTGTCCATTCAATGATATTGCAACACTGCCATCAGGAGTGATATCAACCTTAAAGAGCACACTCAAGAAGATTGATCTTCCTATCGATGACCGTGTCGCCAGAGCGTTTCTCAGCGCCATGGTGTCACTGGTTGGTGGCTACCGAGACGCGCTGAGGTTCAAACCTGGTGAACAAATCATATTTGACAAAGATGTGTTTATTACGCAGTCAAAGAGTCCAGATAAAAGGGCATTCTTGCAGTTGACTTTACATTTGCAGTTATTTGAACAGTTTGTTTCTGAACGACTGGAGTTGCTAAATGCAGGCAAAGGCTTCAACGATTTGTTTGAGGAGCAGATTGGAATGCAAGCTGAagATCAAAAGAAACTCAAGCATCAATACAAACAGTGGATGAAACAAAGTAATGCTTTTGTAGGAAAGGCCATGAAGTCAGCGCACAAAGGCCTCCACGGAACGAAACAAAATCTAATAGTAGTCGGCAAAGAAGCCAAGAAGAATTTGAACCAAATGAAAGCCAACATCAACGAAATGCTGAAAGGAAAGGACGACGAAGAGATTGGAGGAGAGATCAAGAAGTCCAACTCGTTACCGTACATGAAGCACTACGGTATTGGCGCTAGGATATCACCGATCATCAGACGTAGAGCGTTATCACCTCAACCACAGGCGAGAAAAGCACATAGCTTCCATCAAGATGGCGACCACAGAACACGACCGCAGCGACCCCCACCCCCCAGGAAAAGCGTACGGGACCGCACCAATGCCATTTCTTTGGTCATAGACAGTGACGTGCATGGACGCAAACTATTAACTCGACACAGTACTCCAAACCTGTCGACCGAGCCACCGATAGCCACGCTCGTGTCGTTGGATGAAGATCAACCCAGTAATGAGGCTCTAAGCGACGACGCTATCAATCACGGAGCAACGAGCGAAGGTACAAACCAACAAAATTCCACGACATCGCAAaccgaaaaatctccgaaacctgaccgaaaatctccgaaacctgaccgaaaatctccgaaacctgaccaaaaatctccgaaacctgaccgaCCACCACGACGGTCGTCGTTGGGACGGAACCGACCGGCCGTTCCTCCGAGGCCATCTATCAAGAAAAAGACTTCGTCGTCTTCTGTAACCTCCACTGGATCGCCTCAAAATTCGCCCGTGACGCCTTCGGAGTGTTTACTTACCCCTTTGAAGCCAGTACCAATAGACTTACAGCAAGACATAATGAACTCATTGGGACCGGACTGTCAAGTGTTTTTCCCTGAATGGAAAAGCCGTATTTCAGAAATCAATTCTGAAATTTCTTCATCGACATCGGTGTCCAGTTCGACGGCAGGCACGTCGAAAACTGTTTCAACAaatgccgaacattcgccgacgaatgccgaacattcgacgacgaatgccgaacattcgccgacgTTAATCGGTGGTCATGCGACTGATACGACGACGAGTCGTGGTGCCACGAAGATTTCCGAAAGCTCGCCGACGTTAAACGACGAGTTGTCGAACTCGTTAGAACTTAAGGATAGACAGAAAAACGCTCTTAAGGAAAATGGATCATCGAATGAAACTAAAGTATCTTTACTAGATACTGATACGTCATCGTCATCGTCAGAAGATTTTAAATTCAATTCCGCTTCTTCTCAGCCTTCTCAATGGGTGAATTTTGACTAG

Transcript

alvinactis_v1_g12544

Protein

alvinactis_v1_g12544

MIGRVFLVFKHVASTMSSIEKLKISGIRSYSHVEPSVIEFFKPLTLIVGSNGAGKTSIIECLKYVTTGDMPPGSKSSYFVHDPKVAGEQEVKGQVKLMFTDTTQKTVVVTRTLISQQKGKKVETRSLESVIKRDIQGERRSLSSKCAEVNHEMITFLGVSKAVLENVIFCHQEESNWPLSEGKALKQKFDDIFAATRYIKALEAIRKLRQEQTKTVSLCEAELKYLKESRDKAHEINGELEKREGKVQATKDSIVKLTDALQPVETRMVELDDVMQEVNELTKEIELLMSKKDQLADMESDLQEKITVIFKGSTEELQRIYNEFQTKIGEKNGLLQQKEDEHHRLVAKQQELARDKNSVLLEHGKLEQQAQRHKMNLEERDDMVVSLASHYGIPRFDTSPFTDSRVDDFILELRTNYAALVEDTKQQKKVFTEKIEAAQNKVDDIKRTRAEYGETIRLKKNMMRDNQVDLKSIGQELSNVDASARRLKSLDTELQRAENDLKEAKEQGNVDDMNAEIEKLQNDKRQVDNELSRLREEQTTMHLQSTTQAKLDMLVKEKSEKEDKIQKLMDKHDEDIKMYLGGTRTSESLTGKLSQYVKAKSKELHETQNRIQRLKQAQSAKNANKKNMEDLLASKQDEAETYKQKLKEACGDNDYNTLKEHIKNQIDEFRDDKSLYASIESIYKKYIEKLQDESVKSKGCPLCHRCFDSNRQVNELVTELSEKVTSLPEKRAKNESRLEREEMRYQNILNLGPIKDNLEKLEATEIQETKSRITDISSEIEKTDADIIELEDVYSMTESEECNVREMEPDIREAENMKKGFKDLDKNISLLQSKLHGIAPGRTMQAVTNEITDRQDRSETLDRHIDRRRRALTQLQRQISTLESNMHDLKSQKLQLTERLQRRTHLEGQKAELTAKNDALEREIKDAEAQARPIQAMLEDQESKKYQIVSEKEAMEEENRKKLTEIRTNGDKLRDKISEIKKYISQGNETALQDNEERLNNLENREVQIFQKKETLSSNIDSLKDDISKQEIRARDLDDNLKLKSTQKEIQNVARKVKSVEVNLRRHGDQRSLISERSKLQRQSHDMRKEKAQLEGRQKGYEDEIRRFQTELRSDMYRNAEEKHRDKVIEMKTTQMASVDLDKYYKALDRAIMKFHSLKMSEINKIVKEYWNNTYKGNDIDTIEIRSDEEEGSGASKARRTYNYRVVMIKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIFTLDEPTTNLDEDNIYSLAGQLASIIRTRHGQKNFQLIVITHDENFVDILGRADFVDHYYRIFKDDRADPERILECCLEITAPDVDTDTKPSIKYIFPPDYEDQEALKHIPGFCYPCISNSEAVQNYTFVLTDIQGQYRFGYCRYSPNVKTCLCIVSYLPWFETFYILLNTISELKKKKEEGDVVGPLLERLLKLSPPTPGCSIVVKPEGSSKEYKFKTPDTSKLPCIPENHNLTDYYAHIEPSNMILLFVCMFFERRIIVTSKKLSVLTACTYGAMSLLYPMHWQHMFVPIVPPHLLDYCCAPMPFLAGVHSSLMPIVRKMPLDDVVILDADTNEVECPFNDIATLPSGVISTLKSTLKKIDLPIDDRVARAFLSAMVSLVGGYRDALRFKPGEQIIFDKDVFITQSKSPDKRAFLQLTLHLQLFEQFVSERLELLNAGKGFNDLFEEQIGMQAEDQKKLKHQYKQWMKQSNAFVGKAMKSAHKGLHGTKQNLIVVGKEAKKNLNQMKANINEMLKGKDDEEIGGEIKKSNSLPYMKHYGIGARISPIIRRRALSPQPQARKAHSFHQDGDHRTRPQRPPPPRKSVRDRTNAISLVIDSDVHGRKLLTRHSTPNLSTEPPIATLVSLDEDQPSNEALSDDAINHGATSEGTNQQNSTTSQTEKSPKPDRKSPKPDRKSPKPDQKSPKPDRPPRRSSLGRNRPAVPPRPSIKKKTSSSSVTSTGSPQNSPVTPSECLLTPLKPVPIDLQQDIMNSLGPDCQVFFPEWKSRISEINSEISSSTSVSSSTAGTSKTVSTNAEHSPTNAEHSTTNAEHSPTLIGGHATDTTTSRGATKISESSPTLNDELSNSLELKDRQKNALKENGSSNETKVSLLDTDTSSSSSEDFKFNSASSQPSQWVNFD*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02141	DENN	DENN (AEX-3) domain	Family	Interproscan
PF03455	dDENN	dDENN domain	Domain	Interproscan
PF03456	uDENN	uDENN domain	Domain	Interproscan
PF04423	Rad50_zn_hook	Rad50 zinc hook motif	Motif	Interproscan
PF13476	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001194	Domain	cDENN domain	Interproscan
IPR004584	Family	DNA repair protein Rad50, eukaryotes	Interproscan
IPR005112	Domain	dDENN domain	Interproscan
IPR005113	Domain	uDENN domain	Interproscan
IPR013134	Domain	RAD50, zinc hook	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037516	Domain	Tripartite DENN domain	Interproscan
IPR038729	Domain	Rad50/SbcC-type AAA domain	Interproscan
IPR043153	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18867	RAD50	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000722	Biological Process	telomere maintenance via recombination	Interproscan
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0000794	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003691	Molecular Function	double-stranded telomeric DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0007004	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030870	Cellular Component	Mre11 complex	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043047	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051880	Molecular Function	G-quadruplex DNA binding	Interproscan
GO:0070192	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan
GO:0090305	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-