Detailed information of alvinactis_v1_g12544 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_6:8184542...8258442
NR annotation: XP_020915351.1, DNA repair protein RAD50 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9JIL8DNA repair protein RAD50 OS=Rattus norvegicus OX=10116 GN=Rad50 PE=1 SV=1
Q92878DNA repair protein RAD50 OS=Homo sapiens OX=9606 GN=RAD50 PE=1 SV=1
P70388DNA repair protein RAD50 OS=Mus musculus OX=10090 GN=Rad50 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03455dDENNdDENN domainDomainInterproscan
PF04423Rad50_zn_hookRad50 zinc hook motifMotifInterproscan
PF02141DENNDENN (AEX-3) domainFamilyInterproscan
PF13476AAA_23AAA domainDomainInterproscan
PF03456uDENNuDENN domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005112DomaindDENN domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR005113DomainuDENN domainInterproscan
IPR013134DomainRAD50, zinc hookInterproscan
IPR004584FamilyDNA repair protein Rad50, eukaryotesInterproscan
IPR001194DomaincDENN domainInterproscan
IPR043153Homologous_superfamilyDENN domain, C-terminal lobeInterproscan
IPR038729DomainRad50/SbcC-type AAA domainInterproscan
IPR037516DomainTripartite DENN domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18867RAD50Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000722Biological Processtelomere maintenance via recombinationInterproscan
GO:0000794Cellular Componentcondensed nuclear chromosomeInterproscan
GO:0003691Molecular Functiondouble-stranded telomeric DNA bindingInterproscan
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0007004Biological Processtelomere maintenance via telomeraseInterproscan
GO:0030870Cellular ComponentMre11 complexInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan
GO:0043047Molecular Functionsingle-stranded telomeric DNA bindingInterproscan
GO:0051880Molecular FunctionG-quadruplex DNA bindingInterproscan
GO:0070192Biological Processchromosome organization involved in meiotic cell cycleInterproscan
GO:0090305Biological Processobsolete nucleic acid phosphodiester bond hydrolysisInterproscan
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10866RAD50; DNA repair protein RAD50EC:3.6.-.-
DNA repair and recombination proteinsko03400deepkoala

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