Gene detail

Detailed information of alvinactis_v1_g12367 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g12367	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	chr_6	5279904	5297538	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g12367

ATGAATTCAAGAACTGCGCTTCTCGTCTGCTGTTTTGCGGTCCAAACAGTTGCGGCTTTTGAATACGGAACGGACCAGAAGTATGATCTGACGTCATACAATGacgtcacatcacgtgacgtcagtaacgAGGAACAAGAGCTCGATCGTTTGCTGAATGAACTCGTTGAAGATAAACAAAGACAAACAGGCGCACGAATTCAGTGCTACACCTGTGCCAGCACGGAATCATGGGAAGACTGTGAAAGGAACCAGGCCTTAGTTGGTTGTCCAGCGGACACGACTCACTGTATCACGGCAACGATAACCCTCAAGAATCCCGAAGGCCACCCCGTAACTGAGTACTTCAAAAGCTGCGTCTCCAGAGAAAAATGCCACACCCAACACTTCCCAGCATGCAAAGAGGGCTCCAAGGAATCAGCTAAGTGTTCTGTAGAATGCTGTGACAGGATGTATTGTAATAAAGGACAAAATCAACCTGATAAAAGATCGTTCTCGTTCCACTGCAAACCACCCTGTTTGGTGTACGCCACACTGCATGAAATAAACGGCATCGAATTAAAGTCGTCACGGAAGGTACCAGTATTAACGTCACTGTCACATGTTACACCTATTGAGGTTGACATGGCAACAAGAACCCTTTACTGGAGCGACAAAAAGGACAGAGTGATCAAAAGGACGAATCTCGCCAGTGGAATGACTGAGGTCGTGATTGGTGGAGAAAATGGCGTATACGATGGCATCGCTGTGGAGTGGGCTAGTAGACTGCTGTACTGGACTGATAAAATACACAAAAGAATCGAAACTGCAAGGCTGAATGGTTCATCGAGACGTGTACTCGTAGATACGAATCTGGATAAACCTAGAGCTATAGTCGTGGACCCTGAACAAGGTGTCATGTTCTGGACGGACTGGAGTGATATAGGTCCTCGTATTGAGCGTTCGTCATTATCAGGCCAAGACCGACAAGTTCTCGTATCAACGAACATCCGTTGGCCTAACGGACTCGTCCTAGACTACGCCGGGAAAAAAGTCTACTTCAGTGAATCAGAGTTGCATCGAATCGAGTCTATGAACTACGATGGGTCTGACAGGCGTGTCTTATACAGTGATTCTACGATTATTCCCTTTGACTTGGCCCTGTTTAAGACCACGTTATTCTGGAGTGATTGGAGCAGCAGGTCTGTCGAGAAATTCGACGTAAAATCAGGAAAAGGACTTGGGAATTTCGGAAGTCTTACCTCGGATCGAATTGCAGGTGTAGTTGTCCTGGATCCATCAAGACAACCACGAGTAAATTCACGCTGTGTGGTCAATAATGGTGGATGCAGTCATCTTTGCTTCGCGACAGGAATACAAACACGTGTATGTGGATGTCCAAATGGAGTGAAACTATTGGCTGATAAGAGAACATGTGACCTTGGTGTAACTAAACCATCTGAAGCAACAACTGCAGCTGCGACACAACCATATACAAAGAATTCAACCACATTGGAGCCAACAACAACACcaactacagaacaaccaacaacagagcctacaacagcagagcctacaacactgtcaactacagaacaaccaacaacagagcctacaacagcagagcctacaacactgttaactacagaacaaccaacaacagagcctacaacagcagagcctacaacagcagagcctacaacactgtcaactacagaacaaccaacaacagagcctacaacactgtcaacaacagcagaacctacaactttgccaactacagaaaagccaacaacaACAACAATACCTTCAACCAAGGCTCCAACTACGAAACCATCAACCGTTCAATCAACTACACCTAGTCCAAGGTTACAAGTACGCCTTATTGGAGGGGCAGTATCCAGTGAGGGCCGTGTCGAGGTTCGTTATAATGGACGATGGGGCACTATCTGTGATGATATGTGGGACCTTAGGGACGCCATGGTTATTTGCCATATGCTAGGATATCCAGGAGCCATATCCGAGTTTCATAACGGGTATTTTGGTCGTGGGCTTGGTCCAATATGGCTTGACGACGTTAATTGCATAGGTGACGAATCGAGTATAGACACGTGTCGTCATCCTGGTTGGGGTGTTCATAACTGTATGCACGTTGAGGATGCTGCTGTTAAATGCCGGCCACTACACACCGAGTCACCCGCTGTTCCAGTACGTCTAGCTAATGGCCAAGGTACTCACGAAGGACGTGTTGAGGTACGCCACAACGGTCAATGGGGTACAGTATGTGATGATCTATGGTCAAAAAAAGACGCTGATGTTATTTGCCGAATGCTCGGGTATTCGGGTGCTATAGCCGCTACCCTACGAGCATCATTTGGGCGAGGTACAGGACCTATTTGGTTGGATAATGTTCGTTGTCGTGGTAACGAGTTATCTATCGACGAATGCGACCATCAGGGGTGGGGAAGGAATAATTGTCAACACTCTGAAGACGCTGGAGTTATTTGTCAACCGATAGTCAACGTATTGCCTACTATTAGTGCTACTCACGGTCAAATTACTTCAGCAATAACAATGGGGGCAAGAACCCAGCCTCTCGTGTTTATTACAGTCTTAATACTCTTGGCTGTAGTGGCCTCTGTATACGGATCGTTTAACTGCACGCCACCCTGTCTAATATACTCCGCAAAGAACTCCATCAACGCCATCGAACTAAGTACTTCACGAAAGGTTCCTGGACTGAAATATTTTGGTGTTGGTGTATTAGACGTTGACATGGAAACGAAAACCGTCTATTGGTCTGGCTATGGAGAGGTCAAAAAGTTGACTCTCTCGACTAGTGTTCTTAAGCCTGAAGATATGGTTGACGGGTTCGACGAAACATACCAGGGGATAGCGGTGGATTGGATTGGTAGGAAGTTATTTATGACCGTTAGCAATCTCAAGAAAATCGAAACAGCGCCTTTAGATGATCAACAAGGCAAGTATTGGACGGAAGAAATCGTATTTAAAAAACCTCTTGACAAGCCTTGGGCAATAGCTGTGGACCCGTTTGATAGACTTATGTTCTGGACAGACATTGGCAAAAACCCTCGCATTGAACGTGCAACACTAGCAGGACACGATAGACGAGTTCTTGTATCAACAAACATAGCGAATCTGGTTGGGCTTACCGTGGACTATACTGCTAAAAAGATCTACTTCAGTGATTCATCCTTGCGTCGAATTGAGTCGATGAACTACGACGGTAAGATGAGGAGTGTCTTATATAGCATTGACCCCAATATGGCAGCTGTTGGAGGTCTGGCCGTGTATCAGTCGACGCTGTTTTGGATCAACGGGAAGCAAAATCACAACACAATTGAGAAACTTGATCTCAAAACAAAGAAACATATTGGAAATTTTGGAGATCTTGGTATACGTACTACTAATGGTTTGGTTGTGTGGCAGCCACAATTTGATGTTGACATGGCAACGAAAACTCTTTTCTGGGCTAACAAAGATGGAAAGGTGATCAAAAGGCTATATCACATGAATGGCAAACCTGAGTTTGTGATAAAGGGTGAACATGTAGTATACGAGGATGTAGCTGTGGACTGGATTGGCAGGATGTTGTACTGGACAGCTGTTAAATATCACCGCCCATACAAATGGAAAATCGAAGCAGCGAATTTAGATGGGACATCGAAACGATTTATTATTGGCGGTATAGACCGGGACCACCAGCCTCGCGAAATAGTTGTTGATTCCATAGAAGGATATATGTTCTGGACTGACATCGGTACAAACCCTCGCATTGAGCGTGCAACCCTAGCAGGAAACGATAGACGAGTTCTTGTATCAACAAACATAACGAAGCCACGTGGACTTCACCGCTAA

Transcript

alvinactis_v1_g12367

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF16975	UPAR_LY6_2	Ly6/PLAUR domain-containing protein 6, Lypd6	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR001190	Domain	SRCR domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR016054	Domain	Ly-6 antigen/uPA receptor-like	Interproscan
IPR017448	Domain	SRCR-like domain	Interproscan
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR045860	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-