| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| alvinactis_v1_g12270 | SOX TRANSCRIPTION FACTOR | chr_6 | 4270683 | 4286504 | - |
| CDS | |||||
| alvinactis_v1_g12270 | |||||
| Transcript |
| alvinactis_v1_g12270 |
| Protein |
| alvinactis_v1_g12270 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | bHLH |
| Transcription Factors Family | HMG |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00010 | HLH | Helix-loop-helix DNA-binding domain | Domain | Interproscan |
| PF00505 | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| PF07496 | zf-CW | CW-type Zinc Finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009071 | Domain | High mobility group box domain | Interproscan |
| IPR011124 | Domain | Zinc finger, CW-type | Interproscan |
| IPR011598 | Domain | Myc-type, basic helix-loop-helix (bHLH) domain | Interproscan |
| IPR036638 | Homologous_superfamily | Helix-loop-helix DNA-binding domain superfamily | Interproscan |
| IPR036910 | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| IPR050140 | Family | SRY-related HMG-box transcription factors | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10270 | SOX TRANSCRIPTION FACTOR | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0046983 | Molecular Function | protein dimerization activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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