Gene detail

Detailed information of alvinactis_v1_g12065 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g12065	RETINOBLASTOMA-BINDING PROTEIN 6	chr_6	1551742	1563149	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g12065

ATGGATTCAGATTCAGACCAGCAAGAAGACAACAGCATGGCTGAAGAAGGACAGACCGAGAAATCACGATACTTCAATTTCCCTTTTGAATTCAAGAATAACGTTATTGCATTCTATGCCAGGCAAAAGGAAAGAACCGAGAATGTTTTGCGAATGGTTTATGGATTCCTTAGCCCCGTTATAAGCTTCTTTGCGTTCCTCTATGGATTGTTATGCAGTGTTATCTTTGGTGTCAGACATGGCGTCGAGAGAGCTTCATCGTCTGTTCGCTGTCTGATCAACTTCGAGTATAAACAATTCTTTATTTCAGTACTAGAAAGACCTAAAGAGTACTATTCTCAGGCAAAGACAAGACTCTATCAAATCATATGTGTCCCTGTTAGAAGGCGCATTTTCAGAGTTAGAAAAATGGTGAGGGAAAAGTTCCTTGATGTCAGAATTTACTTGCGAGGTTTTCGTGAATTATGTCGAAGACTTTTCCTACTTGCAAGTGACTACACTCCTGGAGGTCAATGGACAGTAGCAACAATGCTACTAATATTTGCAATATTTATTGGAGTTGAAGTTTATCGCTATTCTAGACTTGTTTTCCAATTTCTTGATATGTTGTTGTCGCTATTTACGTTTGTACTCAGCCCTATCCTATGGACACTGCAAGACCTTTGGAAAGTAGTCGCAGTAGGATTCGATTTTCTATTAGGTTTACTAAAACACATGTGTTATCTACTGTGGCTTTGTGTAGAGGGAGTCTTTGACTTTATTCTGAGAGTTTTAACTGCGTTTTCGTCGCGTATTTATAAATGTTCAGTATGGTTTCTTCACCTGAGATGTGTAAAGTACTTCTGGCAAGTACTGCTGGAGTTGATGTTGATTGGCCTTGAAGTTTTGGTCTTCAAAGTCATTCCATTCATGACAGTACTCTGTACTTACCTGTTTGATCGTACAGTCATTCTGAGCTCATATTTTTATAAATACTTTGTGGCTGTTTACGCGGAGGAAGAAATCCATCATAACTACTGGAGTGTTACTAGGATATTTGCTGCAGTCATGACAACGGTATCCCTCCTGGTGGCTTACAGGTTTAGAAACAGGTTTTCTACTCCTGTGTGCTTGGACATAGACAATGAACGGTCGCCACGGAGACATAAATCCATAAGGAGCTCAAACAAAGATGCAAATGATGAACTTGATGAGGTCCACTTTAAATTGAGCTCATTTGCCCATATTTGCTTGGATTTCTTACACGGAGAGTGCAATAAAGGCCGCCGATGTAGTAATCATCATTGCCCCTGGCAATACCACTGGCAGTATCGCATTCCTGTCCAAGGATGGAAAAGCTTCAGTGAGCAAGACAATAATACCATAGAGAAACTATTCTGTAATCCTATCAATGAGATTACAAATACTAGTGATATCAACCCAGACCTGTCAGCAATGGCACGACGGTCTCACTTGAAGACTGACAACTCAATACGACTTGATTTCCAACAAATGCGTATGGAAGTCAACTACCATCGCTCGGAAATAAGACGATTGTCTACCGAAGAGAAGAACTGTGTAAAACGGgaaagaaagaacgctgagaaagaaagaaagaaaggaaggaagaacgaaagaaagaagaggaattggagggaagaaagaaagaaacatatgaaagaaagaaagaacaagaacgaaggattggatgaattggaaggaagaaagaaagaaagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagaaagacagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaagaaagaaagaaagaaagaaaggagcagcacttgaacacgaagaaCAGTAAATAG

Transcript

alvinactis_v1_g12065

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15439	RETINOBLASTOMA-BINDING PROTEIN 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-