Gene detail

Detailed information of alvinactis_v1_g11978 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g11978	FLOTILLIN-RELATED	chr_6	246444	269930	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g11978

ATGGTGTTTTTTTCGACATGTGGGCCAAATGAGGCCATGGTTGTCTCTGGGATGTGTCATACTAGACCAGCTTTGGTTACTGGTGGACGGATATTTGTTTGGCCAGTCGTCCAGAAACTGCAGAAGATTTCACTCAACACTATGACATTAAATGTGGAGTCACCCAAAGTATACACAAGACATGGAGTGCCTATATCAGTGACAGGAATTGCACAGGTAAAAATTCAAGGACAAAACCAGGAGATGTTGCATGCAGCATGTCAACAGTTTCTTGGCAAGTCCACAGAACAGATGAAGCACATAGCATTGGAAACACTTGAAGGACATCAGCGTGCCATCATGGGCACCATGACAGTGGAGGAAATTTACAGAGATCGTAAGAAGTTCTCAAAAAGTGTCTTCGAGGTTGCTTCATCTGACCTTGTGAATATGGGTATTAGCATTGTCAGCTACACTATAAAGGACATCCGCGATGATGAGGGTTATTTGCATGCCCTTGGTATGGCCAGAACAGCACAGGTTAAGAGAGATGCCCGTATTGGTGAAGCTGAAGCTCACAGAGACTCAGGAACCAAGGAAGCACTTGCAGATGAAGCTAGAATGAAGGCAAAGTATGAAAATGACACAGAGATTGCTAAAGCAAAGAGGGACTTTGAACTTAAGAAGGCAGGATATGATATTGAGGTTCAAACTAAGAAAGCCCAGTCAGAGCTTGCCTACAACCTTCAAGCTGCTGTTACCAAGCAAAAGATCAAAGAAGAAGAGATGCAAATTAAGGTTATTGAAAGAGGACAACAAATCAAAGTACAGGAACAGGAAATTGCAAGACGTGAGAAAGAGTTGGATGCCACAGTTAAACAACCAGCAGAAGCAGAAAAGTACAAAGTTGAAACACTTGCTGAAGCTAACAGAAACCGTGTTGTTCTTGAAGCAGAAGCCCAAGCAGAAGCAATCAAGGTGAAGGGTgaagcagaagcttttgctattgaagccaaggccaaagcagaagcagaacagaTGGCCAAGAAAGCTGATGCATGGAAAGAATATCGCGAAGCAGCTGTGGTAGATATGGTCCTGGAGACACTGCCTAAGATTGCCGCTGAGATTGCAGCACCTATTGCCCAATGTAATAAGATTACTATGGTGTCTAACGGCAAAGGAGAGATTGGTGCAAGCAAAATTACTGGAGAAATTCTGGACATTATAGCTAAGTTGCCGAAAGCTGTTGAAAGTCTTACTGGAATTGACATCACCAAGCTGAGTACAGCAAGCACAGCCGCGATGATTGGATCCAAGACAGCATCAGTTAAACCTGCGACAGATTTACGGCAAGTACCAGGAAAAGATGGATATAAGATGTGGCACATCTACAAGCTTATTCGTAACGGTCATGGCTATTTCACCAAGCGAAAAGATATTTACAAAAGCACAGTATTTAGGGTGAATATTGGAGTGAAAGGTGTCGCTGTATGTGACAGGAAAGGAATAGAGGTTTTATTTGATCTGGAGAAGATTTACAAAGAACCAAAGTTTGGTCGTTTGTCTTACAACTTATGTTTACTGGAACACCAAACACCATCAATATTTACCAACGGCATAAAACACGAGCTTCAGAAAGCATTTTTAATGAAAGTATGTCAAATTGCACAGAAAGCAGACGTGTTAGATACTACAAAAACCATTGTCCCCGAGTACCTTGAACGATGGCATAAAGCAGATGCTACACTCAGAGTGAACTGGGAAAATGACGTGATGGCACTAACGAGTGATATATTTAGCCAGGCATTCCTTGGGACCAGAGTTGagccatctagtatgcatgatatggtgcacgcttcctggactaataacaaGGGTGAATTAAGACGTGGAAGGACTGGAGCACAAAGACTAATAGAAGCCTTTAAACAAAGCCCTAAGCTTCACGGTATACTGGACATAGCAAAAGACATGAGACTGACGGAGGAACAAGCCGTGATGGACGTACTTTTTATGCTCAATTTTAATGGTTATGGTGCGGTGAGTGGTGCATTACGTTCAGCTATAGCCAGACTACACAACATACAACCAGAAATGAGACAACAACTTCAACAGGATATCATCAACAGCCTTGATGAAGATGGCATTACACACGAGTCCATGAAGAAGATGAAACAACTGGATCGATTTATACTAGAGGTTTTTCGCCTGTCTCCTCCAGTGCCAGTACTTTTTGGAAGAGCAAATAAAGACCTTCTACTACAGTCAAGTTCTGGCAGTTTTGAAGTTAAAAGCGACGAGCTCATCGTTGGTAATGTTTATCTCATTCAACGCGATCCTACAGTGTTCGCTAATCCAGATGCGTTTTTACCATCAAGATTTGAGGACGAGAGTCTTCTCCATCACATGGTATTCTTTAATGGGCCATATCAAGAAGTAGCCACGCCTAGAAACCACTACTGTCCAGGAAAGGAAATTATTTTCACAGTAATTAAGACCGTCTTGGTTCACTTTATTCTGTGCTGTGAGTTTACTTTCACAAAAACTCCCTTCTGGACCCCCAAAAAATTGAGAAGAATTGGTTGCCCTGACAACAAGATGGAATTAAAGGAATTCATTTATACGCCGAAAACTGACTTGATAAAGGCAGTACAACTAGAAGTTGAGGACATCAGCTGA

Transcript

alvinactis_v1_g11978

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067	p450	Cytochrome P450	Domain	Interproscan
PF01145	Band_7	SPFH domain / Band 7 family	Family	Interproscan
PF15975	Flot	Flotillin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001107	Domain	Band 7 domain	Interproscan
IPR001128	Family	Cytochrome P450	Interproscan
IPR002403	Family	Cytochrome P450, E-class, group IV	Interproscan
IPR027705	Family	Flotillin family	Interproscan
IPR031905	Domain	Flotillin, C-terminal domain	Interproscan
IPR036013	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13806	FLOTILLIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002090	Biological Process	regulation of receptor internalization	Interproscan
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0016600	Cellular Component	flotillin complex	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0045807	Biological Process	positive regulation of endocytosis	Interproscan
GO:0070528	Biological Process	protein kinase C signaling	Interproscan
GO:0072659	Biological Process	protein localization to plasma membrane	Interproscan
GO:1901890	Biological Process	positive regulation of cell junction assembly	Interproscan
GO:2000049	Biological Process	positive regulation of cell-cell adhesion mediated by cadherin	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-