Gene detail

Detailed information of alvinactis_v1_g11942 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g11942	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	chr_5	30704259	30723145	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g11942

ATGGCTGAGGCTTTGGAGAATGAAGAAGACACGGTCGATAGTAATTTAACTGCAGAAAGTATTAAAGTAATAGCAGAGTCTGTTGGTATACCGAACCTAAGCCACGATGCTATTGGTTTACTGATGGATGAAGGCACTTATAGACTAAAACAACTGACACAGGAATCTACAAAGTTTATGCAGCATTCCAAGAGAAGGAAGTTGAACACCAAAGACATTGACAATGCTCTACGTGTACAGAATGTGGAGCCCTTGTATGGGTTCCGTGTACCAGATTCCATACCCTTCAGGTTTACAAGTGGTGGCGGCAGAGAGGTTTATTATTACGACGACCCTGAAATAGACCTTAATGACATTATGACATCACAGTTACCACGGATACCAGTGGATGTCACACTAAAGGCTCATTGGTTAAGTATTGAAGGACTACAGCCAGCAATCCCTGAGAACCCCCCACCTGCTCCAGTCAAACAACCAAAGGAAGACATGAAGTCAAGCAGCAGTAAAGCAGGTGCAACACAAAATGCTTCACAGAAAAAACTTAATAAAATCAGTGAAATAACGTCCAAATTGACACTTAAAAAGACAGTTCACAAACTGCGTCCAAACAAAGGTGGTACATCAGCTGAAGCTAACGCTGAAGCAGCACAGAGCTTTAAAGGAATTGTAACACATGAGCTTTCAGTTGAGCAGCagttgtactacagagagataacagaagcctgtgtagggtcctgtgagtcaaaacgaacaGAAGCACTTCAAAGCTTAGCTACTGATCCAGGCTTGTACCAGATGCTACCAAGATTCTGTACCTTTATCTCAGAAGGGGTACGAGTTAATGTAGCTCAGAACAATCTGGTGTTACTGATATACCTGATGAGAATGGTGAAAGCATTGTTGGACAACTCTACACTTTATCTGGAGAAATATCTACATGAGTTGATCCCTGCCGTAGTAACTTGTGTTGTCAGTAGAAAACTTTGTTCAAAACCTGAGGTTGACAATCACTGGGCTTTGAGGGATTTTGGAGCAAGGCTTATTGCACAGATTTGTAGAACGTTTAATTCAACTACAAACAGTGTTCAAACAAGAGTGACAAAAACATACTGCAAGGCTCTTCAACAGAGCAGAGCACCTCTCGCTACACATTATGGAGCAATAACAGGACTGGCTGAACTAGGACAAGAAGTCATCAAGGTTCTTGTTATACCACGACTAAAGACAGAGAGTATCCTTCTATACAAGGCTTTACAACAACAAGCTGATCCTGTGGAGAAAAACGCTGCTGAAAACTTGAAAAATCTACTGCTTAAACATTGTCCAGGTGTCGTAATACGCATGCGTCACCCACCAGATATCCCAGAGAAGTTTGAGGCAGACTATGGCAGCATTGGCCGTGTATTATGCACCAAAGTAGCTCAACTGAGACTAGGAATCAGTGCCCTAAAACCCAATGTATTAACCTTGAAGACTACTCCCCTAACACCCACCACGCCCACTACTCCAGGCTCTACAAACCCCCCCTTTCTAATCGTAACAACTGGGATCTTGCCGACAACACCAACAAGTCCTGCTGTGACTATTGCAACACCAGTTACCATGACAACAGCTGGTGTAACTATAGTCAAGCCATCTACTCCTGTTTCGTCGTTCTTCTTTGCTGTTCACATGACCAGTATATTTGACCCCATGACCAGCGCTTCGCAATCGACGTCCCCTACTCTGGACATGCTCGATGGCTCGTTAGACTCTGAGAAATCATCCCTTCACGAGCACAAGAGCTCCGATCCGACCCAAGTCTCACCAGAACCAGAAACGGTGACGGTGACTGTGTCGACCGTCGGGGACGAACACGGACTAGTTGGCCAACAAACCAATTCGCCCTTCGTTGCTGACCCAAACGCCATCCAGTTCCAGTACAGAACAGACAACAATGGCCAAGTTCAGGGCACAGGATTCGACGGAGGAAGCCAGCAGATCCGAGTGGTTCACGTTCAATCTGATGGAGTTGGGGATCGCGTCGATGGAGCTGGAACACCGACGGGTTTTGTCACTCAGCCAACCCAGGTTCATGCTCAGACGGTGATTCAAAGTCCTTTTAGTAATGGCTCCTCTCCGACGCATCATTCTGATACCGATGCTCCCACAGATGCGAATCGGTTCACGTACTTCCACTCCCAAGCCGATGCAACGGGAGGAGGGAACGTAGTCCAGGCGGGAACTGAACCGATGGACTCCAACAACACTTACGCTGTTCGAAGCATTCCAGTCTCACTTCAACAACCTTCTTCGCCTTCACAACTTTCCGGTACAATTACAATGGCGGAAGCTCAGACAATCACTACCGTTGGCACTGCTGCAGGTGGCTTTTACGTGATGATGTCGCCTCAAGAAGTCATGCAAACTGGAAATCAAAGAACCATAGCGCCGAGAACCCACCAAATAGGAAGTAAAATCGAAGGGACACGAGGGAGAGATGACAAAAGACGAGAGACGCACAATGAAGTGGAACGTCGCAGGCGTGATAAAATCAATGGCTGGATTTCCAAGTTGGCTAAAGTTGTTCCAGATTGTTCTTGTGACCAAACCAAAGCTGGGCAGAGCAAGGGTGGGATATTAGCCAAGACTGTCGACTACATCAATGAGATCAGAACAGCCAACACAAGAATGGGAGAATCAATCAAAGACAACGAGCAGTTGGCCATCGATATGGAGTTGCTACGGCAACAGAATGAAGACCTCCGACAAGAAAATGTCATCCTACGTTCTCAACTCCAACAACATGGCATCGATCTTGGAGCTATAGTGTCAATTGGTCAGCCTACCAaccaaggagcaccaactggacattctagtgtgtag

Transcript

alvinactis_v1_g11942

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF02969	TAF	TATA box binding protein associated factor (TAF)	Domain	Interproscan
PF07571	TAF6_C	TAF6 C-terminal HEAT repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004823	Domain	TATA box binding protein associated factor (TAF), histone-like fold domain	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR011442	Domain	TAF6, C-terminal HEAT repeat domain	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR037796	Family	Transcription initiation factor TFIID subunit 6	Interproscan
IPR046344	Homologous_superfamily	TAF6, C-terminal HEAT repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10221	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000124	Cellular Component	SAGA complex	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0046695	Cellular Component	SLIK (SAGA-like) complex	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-