Gene detail

Detailed information of alvinactis_v1_g1186 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g1186	GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED	chr_1	20218094	20228386	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g1186

ATGTTCAGCCGCTGTCTGGCAAGCAATGCCTCGCGTCAAGAAGAAAAGAAATCCCTGATTAATGCCGTGGTTGATAAAAATATTCTGTCCGTGCACTGGCCAGATGGCGATGCTCGATTCCACCATGTGTGGCTTCGTCATCACTGCCCGTGTCACCAGTGTTTAAACCCAACGACCAAGCAGAGAACTATCGACATGGCGCTGATTCCTGACCAAGTACGCCCACAGCAAGTCAATCTCACCTCGAATGGACTCCAAATTATCTGGGATGACGATGGCCACGAGACTTGCTATGACGGTTCTTGGTTGAAGGAGAATGCGTACGATGGCAGTTTTGTAGAACGACGACGAGTAAACGGATTTGGAACCATTGCCAATGAGTCTGATATGACTTTATGGAACCGTGGAATTCTGGCTTCCAAGCCTCCTCAAGAATTCAGTTACTCTGATATATTGGGTAACAGAGAGGAAGTGCTGCGTGAATCATTGAATAGCATATTTCGCTATGGCTTTATATTTGTCAACGAAACACCAACAGACGAGGAATCAACCTTGAAGATTTGCCAGGAGATTGTGGGTCCTATCAGAGAGACTCCTGAAGGTCGGGTTTACGTCATAGAAAATAAAGGACTATGCAACTCAGATCTGTCTTACTTTTCCAGTGCGTTACACGGCCATACAGATTTTACGTTCTACAAGGATCCACCTGGGATTCAAGCCATGCACTGCACCCACCATCACGGCACTGGAGGGATGAGCCTACTGGTCGATGGGTTTCGGGCAGCAAAGACCCTCTATGAAGAAGACGCACAAGCATTCAAGATCTTAGCAAGTACTGAATTGCGCTTTGGAAGTACTCACCATTGCATTGAAGGTCATGGCACTATTCTCGAGTTAGATCCTTTTACGAAGGAATTAATGAGAGTGCGCTGGAACAATTCGCGCGTTAACATAAAGCTCAGTTTTGACGAAATGGAAAGGTTTTACCAAGCAGTAAGATTGTATGGGTCGATCGTCCGACGAGAGGAAAACGAGTTGTGGTACAAGCTGACTCCTGGGAAAGTTGTGGTAATGGACAATCGACGAATAATACACGGCAGGTCGGCAGTGCAAGGCGCAAGGAAGCTATTGGGCTGCTATGTGTCTTACGATGATTATATTGGCAAATTTATTCAACTCGGCACAGGTACACAATGTGGGTTATCGAGCAGAAAACTCAGGTGCACAGGATTGAAGCACGTTCCAAAGTTTGCTGATCAATTTCTATCCTCTCTACACATAGATTTGAGCAAGAATTCGATCAAACTGGTACCATCGACGAGTTTCAAGGATTTCTCTAGTGTAAGATATGTGAATCTGTCACGGAATGCGATTGATCGAATCGAGCAAGGGACCTTCAGGAGCAAGCAGTATGAATGGATAGACCTGTCCCACAACAAACTCACAACTTTAGGAAGAGAAGTATTTCCTGACGACGGCGCTTTACAGAAAAAATCGGCAGAAATATTCTTGCACGATAATCCCTGGGACTGCACATGCGCACTGAAATGGATGATTGATTTAATCAAAGACTCCCTAATCAGACCCAGGCTCGCTCAGCCAACATGTCTCACGCCTCGGAATATCCAGGGCACAAAGCTTGTAACACTAGAagctgaacattactgcgTTATTCAGGAATGTTTGGAATGTGATGACGCAGCAGACTGCAGAGTAAACGGAAGTAGATACGAATGTGTTTGTAAATCGACTTATAATGGAAATGGGAAATTCTGTGCTGATGTAGATGAATGTGCCAAATCTGTTACGAACGTTTGTAAGCACAACGAGATATGCGAAAACTTCTCTGGTGGCTACAAATGTACCTGTTCTGTTGGATTTGAGCGTAAAGATGGAGAATGCAACGACGTGAACGAGTGTGAGCCGCCACCCGTTGGTTGTGGACCAGGACAAGGAAGATGTCAAAACACTGTTGGTAGCTATAAGTGTAACTGTCATCCGGGACTTCGATACGTCACAGGGCGTGGCTGTGTTGACATCGACGAGTGCAAAAGTGGGGTCGATCCGTGTGAACACATCTCTCATAGCACGTGTGTTAATACTGCATTTCTGGACGTTGGGGACACAGGATATGATTGTAGATGTGACGAAGGCTATACGATGTCTGGCCAGGTCTGTATACCCACAGCTGCTGAATCCAGCAAGATGTTAGTGATTTTAGCAGCTTGTTTTGGAGGGTTTGTAGTCATTCTCATGATCTTAATCACCGTCGTTACTATTCTACGCAGAAGAGTGAGGAAACGGAACGAAGAACAAGGCGAGTTCATTATGGCTCCCGTAACCATGACAACACCCATGGACTTTGCTTTCATGGATATGCCACAAGAACAAGGCGAAGAAGCGGAAAACGAGGAATGGCGAGATGAGGAGGACTCGGATGATTTTTGA

Transcript

alvinactis_v1_g1186

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02668	TauD	Taurine catabolism dioxygenase TauD, TfdA family	Domain	Interproscan
PF06155	GBBH-like_N	Gamma-butyrobetaine hydroxylase-like, N-terminal	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR003819	Domain	TauD/TfdA-like domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR010376	Domain	Gamma-butyrobetaine hydroxylase-like, N-terminal	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR038492	Homologous_superfamily	GBBH-like, N-terminal domain superfamily	Interproscan
IPR042098	Homologous_superfamily	Taurine dioxygenase TauD-like superfamily	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR050411	Family	Alpha-ketoglutarate-dependent hydroxylases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10696	GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0045329	Biological Process	carnitine biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-