Gene detail

Detailed information of alvinactis_v1_g11830 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g11830	20 KD NUCLEAR CAP BINDING PROTEIN	chr_5	29089232	29110859	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g11830

ATGGCGGACCTCAGTGCTTACAGAGACCAACACTTTAAGGGGACACGACAAATGCTAGAACGGCTTTTGGAGCTTAGTAGTACGTTATATGTCGGGAACCTATCCTTTTACACGTCTGAAGAACAGCTCTACGAACTGTTCAGCCGAACTGGCGACTTAAAAAGAATCATTATGGGCTTGGACAAGATGAAGAAGACGCCATGTGGATTTTGCTTTGTAGAATATTACAGTCGTGAAGCTGCTTTTAATGCAATCCGATACATAAATGGAACTCGTTTAGATAACCGCATTATTCGTACAGACTTTGACCAGGGTTTCTCAGAAGGACGTCAGTTTGGAAGAGGAAAGTCTGGAGGACAGGTGCGTGATGAATATCGTGATGATTTTGATCCAGGCCGTGGAGGCTTTGGTTGGCATTTCAATGAAGCAATGGATCAAAGCCAACTCTTTTTTGGAACCAAACTGCAGCAATTGAGAGAGGAGCAGTCTAACGTCAGTTTCTACACCTTTTTAAGGCCGTCCGTAATTTGTAGAGTGGACCAACATCAGCAATTAAAAACCAACTGCAACCCATTAATAGGAGAGCAAAGTGATTCCACTTTAGTTTTCGGCTTCTCTAATCCATCTGGTATCATTGAACCTGGACCGGCCACACACGTCCGTCAAAGCTCTTTATGCGATGGCTTCTTCCTCAGCTCGAAAACAAACCAAGGTGGTTCTGAGATACACCGCATGATGGTAGAAAGCAAGTTCTCTTCGAATTTACCAGATCCCAACGCCGGTGACCCAAATCAAGTCCAAACGACTAAGGATAGCAGagcccaatgtcagccagagaaaagcctgtctctactaataccgaagcagaaagacggtacaccacatcaagacaagatggcttggtgtagcacaacccaatggcagccagagaaaagccagtatctactaataccgaagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagcctctaattatacccaagcagaaagacggtacaccacatcaagacaagatggcttggtgtagcacaacccaatggcagccagagaaaaggcagtatctactaataccgaagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagctcaatggcagccagagaaaaggcagtctctactaataccccagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagcctctaattatacccaagcagaaagacggcacaccacatcaagacaagatggcttggtgtagcacaacccaatggcagccagagaaaaggcagtatctactaataccgaagcagaaagacggtacaccatatcaagacaagatggcttcgtgtagtacagctcaatggcagccagagaaaaggcagtctctactaataccccagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagtctctactaatacccaagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagcacaacccaatggcagccagagaaaaggcagtctctactaataccgaagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagcacaacccaatggcagccagagaaaaggcagtctctactaataccgaagcaacaagacgacacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagtctctactaataccccagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagtctctactaataccgaagcaacaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagtctctaattatacccaagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagtctctaattatacccaagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagtctctaattatacccaagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagtctctactaatacccaagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaagcctgtctctagtaataccccagcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagtctctaattatacccatgcagaaagacggtacaccacatcaagacaagatggcttcgtgtagcacagcccaatggcagccagagaaaaggcagtctctaattatacccatgcagaaagacggtacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaaggcagtctctaattatacccaagcagaaagacggtacaccacatcaagacaagatggcttggtgtagcacaacccaatggcagccagagaaaagccagtctctactaataccgaagcaacaagacgacacaccacatcaagacaagatggcttcgtgtagtacagcccaatggcagccagagaaaagccagtctctaattatacccaagcagaaagacggtGTACGACATACCAAAAAGATACACGAGTGCCCTGTGTGTTTCAAAAGGCTCGCGAAATCTTCCCATTTGAAGcctagtctagagttctttggatacgtcttccctgccgagggccggatgtcaccagatccaaagaagattgaagagatagtcaacctagaggctccattaaacacatccgaaaaggaacagcactggcaatggacagatcgtcaccaacatgccttccatcaagtcaaagatgccctagcgaaagcatctactacagcgtatctcagctag

Transcript

alvinactis_v1_g11830

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR027157	Family	Nuclear cap-binding protein subunit 2	Interproscan
IPR034148	Domain	NCBP2, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000339	Molecular Function	RNA cap binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005846	Cellular Component	nuclear cap binding complex	Interproscan
GO:0045292	Biological Process	mRNA cis splicing, via spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-