Gene detail

Detailed information of alvinactis_v1_g11699 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_5:26821818...26858261
NR annotation: XP_028516352.1, lymphocyte-specific helicase [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g11699

ATGATTGGTTCATCGAATGGCGGGAAATCTAACCACGTGATCAACGCGGCTGGTGACACAACAATCACTGGTTTTGCAAGTCGACCGAAAAATACATCGAAACAACTCCAAAATACACGAATACCTGGTGGCAAAGCCGCTTTATCTAATATGTCATTAATTTCGAGGGCATTGGATTATTTGACTGGTTCCCCTGCAAGGGCTGATGTTGTCCCTGACAAATTTGAAGATGCAGAGAATAATTCACTCCCTGTTCAAGCCAATACTAATGCGGTAGAGAGTTCATCCATGACAGACAGTGAAGAAGCTGTTGTGCCTTCAAGGAAGATAATGTCTCCTCAAATAGCAAGCAAGCCTCAAGTTGCACCTGACTTGCAGAATGATGACAGTGAAGAGCAAGAAGCTTGTATCACTGCTTCTATGGAAGCTGAGGAGAAGAACATACATCAACAATTATTGAAACAAGAACAGAAAGAAACAACTGAGGGTATGGATGAATGGGCTGCAATGCAAGAAAGCCAGCGATTCGCCAGGTTACAACACTTGTTGGAGAAGTCTCACATCTACACACAGTTCTTACTCAAACGAATGGAAGAACAAAAAGAAGATGAAGAGAATCGACAAAAAAGGATCGCAAAGAGACAAGAAAACAAGGAGATCAAGGACCAGGCAGTCAAGGGAAATCAGGTTATCAGAAAGTCTGCTCGACGAAAAGAAAATGAGCAGACTAAGAATGAGGACTTCCATGATGTGCCTAGTGACGAACCAGTGATTAAAGTCAAAAAAGGCAGAAAAAGAAAAGCAGAGAATCCTGTCACAAAAATATCTGATTATATCACAGAAgagGCACTTGTGAAAAGGCAAAAAGTATCAGAACACAAAAGTCCAACTAGAACTCCTCTGTCTGCTTGCAGTCCAGATCAGTGTGTTCCCATTACACCTAAAAGTGCTTCCCCTAAGAAAGTTACCGGTAGTGTTGAGAGCAGTAAAACAAAGGTGTTAAACAGAGGTGATAATGTTGTGCACCCATCACAACCACCATTGGTCACAGGAGGTGTGTTAAGGTCTTATCAGATCGATGGACTCAAGTGGCTGCAGGTTCTGTATGAAAATGGAGTCAATGGTATTCTAGCAGATGAGATGGGTCTTGGTAAAACTATCCAGTGTATTGCTCTAGTAGCACATCTGATTGAAATGGGTGTCAAGGGACCATTTCTAGTAGCTGCACCCCTGTCTACTTTACCCAACTGGGTCTCTGAATTCCACAGATTTACACCCAAGGTCCCTGTAGTCTTGTACCATGGCAACAAAGATGAAAGAATCTTACTACGAAGAAAGATTGACAAGCTGATCCAAGTTGGTCCATATGTTACTCAACCTGTCGTAATAACGTCCTATGAAATCTGCATGAATGATCAGAAGTTCTTGGCTCCCATGTGCTGGAAGCATATGATTGTGGATGAAGGACATCGTATCAAGAATTTAAACTGTAGACTCATCAGGGAACTGAAAACATACAACACTGCCAACCGTCTTCTTCTAACTGGAACACCCTTACAAAACAACCTACAAGAGTTATGGTCACTGCTCAATTTTCTTTTACCCGACATCTTTGATGAACTGAGTAGTTTCCAGAGACTGTTTGATTTCGCTGCTATTGGTGATGAGGAAAGTAATGAGCGCATTCTTGCACAGGAGAGGGAGCATCAAGTATTAGAAAGACTTCACGGTATTCTTACTCCATTTCTCCTGCGGCGATTAAAGATGGATGTGGAGCTGTCCCTGCCTCCCAAGAGAGAAATGGTTGTTTATGCTCCTTTAACAAACAAACAAACAGAGTTTTACAAAGCAATTCTTGACAAGACAATCTTGGACATTGTAGGTTCAAAGAAGAGTAATGTTGAAGAAGATACTGTTGAGGTGACATCTACAGGAAGACCCAAGAGAAAAAACAGAGTTACTATAGACTACAATATATTTGATACAAAAGACTTTGAGGAACTTTCTGAGCAAATGATGACACTGCAAAATACAAGGCGATCAGATGCAAGCACAACGAAACACCAAGAACAAGATTACGACATTAATGTACCAATTGTTAACGTTCTAATGTCTCTGCGTAAGTGTTGCAACCACCCCTATCTACTGGAATACCCACTGAACCCAGCAACACAGCAGTTTAAGGTGGACGAGGAGCTTGTGAGATGTTCTGGTAAAATGATGTTGTTAGATCAACTTCTTACTGCATTGCGATCACGAGGCCACAAGGTTCTGCTGTTCTCACAAATGACCAAGATGTTGGACATCATAGAAGATTATTGCTATTATCGAAAATTGAACTTCTGTAGATTGGATGGATCAATTAAATTTGAAGAAAGACGAGAACAGATTGATGCATTCAATACAAACCCAGATGTGTTTATCTTCCTACTAAGCACTCGTGCTGGTGGCCTGGGGTTAAATCTTCCAGCTGCGATACTGTTATCATCTATGATAGTGACTGGTTGTCAGAGGAGtgatgatggtggtattgatgataactatgatagatgcatgcagttgAATCCCCAGGCTGACATCCAGGCCCAAGACAGATGTCATCGTATTGGTCAAACTAAACCTATAGTAGTTTATAGACTAGTTACTGCTAACACAGTGGATCAGAAGATGGTCGAAAGAGCTGCTAGCAAACGTAGATTGGAGAAGTTAGTCATACATAAAGGGAAATTCAAAGGGAAAATGGAGAGCAATGCAATCAGTACCGAAGAGTTAAAAGAATTACTGGAGTCTTCACCCATTGGTCATATTGTCACCAATGATGCTTTGATACTTGACAACAAGGAACTGAACTCTCTGTTGGACAGGACTGACCTCAAGGCTAAACAACAGCCAGACACTGTACCTGGCGTCAGTGGTGTTGATAGCACTTTATTTAGAGTTGTTGAAGACACAAGTTAA

Transcript

alvinactis_v1_g11699

Protein

Uniprot

Uniprot term	Description
Q9NRZ9	Lymphoid-specific helicase OS=Homo sapiens OX=9606 GN=HELLS PE=1 SV=1
Q60848	Lymphocyte-specific helicase OS=Mus musculus OX=10090 GN=Hells PE=1 SV=2
Q9XFH4	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana OX=3702 GN=DDM1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47161	LYMPHOID-SPECIFIC HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005721	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006306	Biological Process	obsolete DNA methylation	Interproscan
GO:0006346	Biological Process	DNA methylation-dependent constitutive heterochromatin formation	Interproscan
GO:0010216	Biological Process	obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation	Interproscan
GO:0031508	Biological Process	pericentric heterochromatin formation	Interproscan
GO:0046651	Biological Process	lymphocyte proliferation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19001	HELLS, DDM1; ATP-dependent DNA helicase	-	Chromosome and associated proteins	ko03036	deepkoala