Gene detail

Detailed information of alvinactis_v1_g10945 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g10945	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3	chr_5	15228798	15286476	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g10945

ATGTACGGGAACCCTGTGTCGTACCCATGGAGCTCTTCGGGCGACAAAAACATGGCGGCCGTCCATCATTCTTCGTTGTCCAAAGAAATACGCGAAAGACTTGGCTTGTGGGATGGCAAGGAAAATTGTCTGGCTCCTTTAACTGAAGCCCAGAAAAACAGCGTAGCAGAGCTGACTGCTGTGTCGTCCAGTAGAGCGCTTCCGAGTGAGTTGCCTGTTGACGATTACGCTCATATCCCAAGAAATCGATTACTAAGTGACAGCAGTAAACAAGTGCAGTTGGACATAGCAAGTGTTCATCTTGGACAAGAAAAGGTTGAAAATGCGCAACAGTTTTTTACATGGTTTGCTCGTGTTGAAGCTCAAATGGAAGAGGAACAAGAGTCTTCATATCGTTCATATTCAGATCAACTCCAATCGTACCGTCAACACTGTGACAGTGTCTTGAGTGAGGTAGAAGTTGCATTATCCCATCTGAAGCAACTCCAGATGCAGCATGTGATGGTGTCTACTAAAACTGGTGCATTACACGAGGCTTGTGAACAGTTACTTCAAGATCAGACAAAGTTAGTCAACATGGCAGAGAGTATTAGTAACAAGCTGTCATATTTCAACACACTGGAACATCTACAACATAAACTGAATTCTCCTACTTTGTCAGTGAACAGTGAATCATTCATTCCTCTCTTAACACAACTAGATGAATGTatatcatatatctcaagtaatCCTCATTTCAAAGAATCTTCAATCTATTTAACCAAGTTCAAGCACTGTCTAAACCAATCTCTTCATGTTATAAAATCACATGTCATCACACTTCTCAAAAATGCAACGACGCAGGTTCTAAACAACAAGGATGCATCTAGTTCAGAGAACTCTTTTGCTCTGTTTTATGGAAAATTCAGGGCTTGTGCTCCTAGAGTCAAGTCTTTGATGGAACAAATTGAACAAAGGTCGTACATGACTGCAGAATATGCATCGTTATTGAGTGATTGTCAACAGTGCTATTTTGACCAGCGTTTCCAGTTACTTACACCATGTGTTGCTGATGCTGTAGACAAGTTAACCAAGCAATATGCCAGGAATCCCTGCTCTTTGGTACGTGCAGGATGTTCAGTATTGATCCATGTTTGCCAGGATGAATACCAGCTTTATTATCATTTTTTCTCCAAGCCAAGCATCGGTGTAGATACTCTTCTAGAAAACCTCAGTAGCACCTTGTATGACTGCTTAAGACCAATCATCATTCACATGAATCACATGGAAACCTTGGCTGAACTGTGCTCAATACTGAAGGTGGAAATGCTAGAGGACCATGTAGAACAGAGAGGAGATGAGCTTGCAGCATTTGGCACAGTGGTGGATCAAATGTTGCAGGATGTCCAGGAAAGATTAGTCTACAGAGCACAGgcatacattgaatcaGACATTAGGAAGTACTCGCCTGCTCCAGGAGACCTGGCCTACCCAGAGAAGTTGATAGTAGAGACAAATGATGAGGAACCAGAGTCTAACGAGGCCAATGCAACCAAAAAGAAGTCTGCTGAACTTCCTGCAGCACTTGTAGACCTGCAGGGTATGTGGTACCCTACCGTCAGAAGAACGCTTGTCTGTCTGTCCAAGCTTTACCGCTGCATCTCGAAAGAGACATTTGAAGGCTTATCCCAAGAGGCTTTGTCTGTTTGTATCGGATCCCTTAAGATCGCAAGCGCTCTTATCACCAAGCGAAAGGATGCCATCAATGGATATCTGTTCTTCATCAAACATCTACTTATTCTACGAGAGCAAATAGCTCCATTTGACGTTGACTTTGCCATCAAGGAAGTGTCACTAGACTTCAGTAAAATGAGGACAGCGGCCTTTGGCTTGTGGTCCAAGAGTAACAAACTCTTCTCATTGAGTAGCAACAACGCTATTTTAGAATTTCTTCTTGAGGGTGCACCGCAACTCACAGAAAGCTACCTTGATTCTAAAAAGGAGATCGACATTGAGCTACGAGTGGTTTGTGAAAAGTTCATTCAACACGTCTCTGATTCCCTTATTTCACCCATGTCAGCTCTCTTATCAAAGGTCAATGTCGTTATTAAGATGGCAGAAGACGAGGGAAGGACGTACCCGCCCAGGCTATTTTTGGATATTTTTGGACAtaaaatctctggaagtgaaaggttgaaatcattcacatctgaagGCCAAGGTCCAAGACTACTACAAACAAATGAACGAGTTGGTAAAGCAAACATATTCAGAAGAAGACGAACAAATTATTGGTTGTCCCTCCTTGCAACAGaaaaaaagtcagatgaagacaaccaggtaatacacaccctcccattcaaagtccttggagtagctcattgtgtagagaagcaggagcacttgaggaaagcacatcaaaaactgtatgctggcgaacaggttttagcttcagttgctccagagccaaataatcccgaagataaggatgccattgctgtttacttaaactatggttttggagagtgccacattggttacattgctaaggaacctactcagtttattcatcctctaattcagagtaactcaattgtttcagttcaaattcaagaaattaaattcagagttacttggcaaagaacgggcttctatgccaaattattgatctcacgaagggggcaatgggctccaacagtggttagagctagcaaaggtgttcgataa

Transcript

alvinactis_v1_g10945

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04136	COG3_N	Conserved oligomeric Golgi complex subunit 3, N-terminal	Repeat	Interproscan
PF08797	HIRAN	HIRAN domain	Domain	Interproscan
PF20671	COG3_C	Conserved oligomeric Golgi complex subunit 3, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007265	Family	Conserved oligomeric Golgi complex, subunit 3	Interproscan
IPR014905	Domain	HIRAN domain	Interproscan
IPR016159	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR048320	Domain	Conserved oligomeric Golgi complex subunit 3, N-terminal	Interproscan
IPR048685	Domain	Conserved oligomeric Golgi complex subunit 3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13302	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005801	Cellular Component	cis-Golgi network	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0007030	Biological Process	Golgi organization	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0017119	Cellular Component	Golgi transport complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-