Detailed information of alvinactis_v1_g10739 in Alvinactis idsseensis sp. Nov. Gene info
Gene IDAnnotationChromosomeStartEndStrand
alvinactis_v1_g10739COLLAGEN ALPHAchr_51132140811336350-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01413C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001442DomainCollagen IV, non-collagenousInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036954Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581Cellular Componentcollagen trimerInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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