Gene detail

Detailed information of alvinactis_v1_g10147 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_5:3069097...3074073
NR annotation: XP_020899271.1, RNA-binding protein 42 [Exaiptasia diaphana]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q6DRG1	RNA-binding protein 42 OS=Danio rerio OX=7955 GN=rbm42 PE=2 SV=2
A2VDB3	RNA-binding protein 42 OS=Xenopus laevis OX=8355 GN=rbm42 PE=2 SV=1
Q0P5L0	RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050825	Family	RNA Recognition Motif and Poly(A) Binding Protein Families	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR034215	Domain	RBM42, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25079	RBM42; RNA-binding protein 42	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala