Gene detail

Detailed information of alvinactis_v1_g10040 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g10040	RFX TRANSCRIPTION FACTOR FAMILY	chr_5	1855914	1865734	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g10040

ATGTATCATACTGGTGGTTCTTACGTGTCACACAGCAAACTACAATCCCCTCTAACTATTCAGTGGTTGAATGAAAACTATGAAGTTGCAGAGGGTGTGAGTCTACCTAGAAGTGCGTTATATTCTCATTATCTGGACTTCTGTGAGAAGAACAACCTCACTCCTGTCAATGCTGCAAGCTTTGGAAAGATCATTCGTCATACGTTTCCTCATCTAAAGACAAGACGATTAGGTACCCGGGGTCAATCCAAGTACCATTACTATGGCATCACAATAAAGACAACATCTCCTTATCATGATACTGTATGTAACGCAGCAAGACAAAGTAGTACAGGGTTCAGTCAAACTTACAGTAAAGCTGAGGCTGACGAAAGGACCACCAGTCATAACGTTACCAAGGCAACGCATGGTTCCAGCAATAGCTTGGTGGCCCCTGGAGGAACATTGTTACCTAACTTCCCGGATGCGACCGTTTTGAAACTGCCCATGGATGTCCCTCATGATAAGGTAAAGACGTTCCTTATCATGTACCGTGCCCATTGCCAACGAATCCTTGATACCATACTCAGGGCTAACTTTGGCGAGGTGCAGAATTTTCTGGTGCACTTTTGGCAAGGAATGCCAAGCCATATGCTCGAGGTTTTGGGTTGCTCTGACGTCATCAATCTTATTGGTATATGTGACAGCATTCTTTATAAGGCGATCAGTGGTGTCTTGATTCCAGGAACACTACAACCTTTACCAGCAAGTCTTACACAGGCAATCCGTCACTTTGCAAAGCAGCTGTGCCATTGGCTAGAGGAATCGCTTGCACATTTACCACAGCCATTACAGGAGAAGAAAGTCAAAGTTGCCAAGAGTTTTGCGCATTCTTTAAGACGACAGACATCACTAACGCATCTTGCCCAGGCTGCGCGTACAGTGCTTCACAGTGCCGAACCTGTCTCTCAAATGCTGGCAGACTGGGGACAGATTGATTTTGAAGGAATAGCTCGACAAGCCATGTGGACGTTTAGTCAAGACACTAACGATGAATACACAATGATTAAAGAAATTCATTCAGAATTCACTCAACTACTCGACCAACAAGCAACTATTGACCAGTACGCTGACTGGGCGTCGTCTTTGGTGGACCGCTTTGTTACCAAGAAAGTCCGTAAGGATGGAGAAACCTTCCAGAAGTGCGCCCAGGATTTCTTGCTGAAATGGTCATTCTTCAGCATCAGAATCGTGAGAGAACTTACTCTACACAGTGCACACAGCTTTGGATCTTTCCATTTGCTTCACATGCTCCTTGAAGATTACATCTTGTACACTGTGGAAAACCAAAGCAATCAAGATGGCTCAGAAATACCATTCAAAAGCTCAGTTCCCGATGTTCCAATGTTTGATGGAGATGAAACAGTGCACTACGACAGAGACAGAGACAGCGATGCATGCGACAAATTCGTTCGTTCAAGACGAACCTCATATGGATCCGGAAACGGAATGCTAAGCCCACGTGACATCCCTCGAGTGTCAACTCAAAGGTCTCCAGTTTACAGGGATGTTTCACCTCATCCAATGGGATCCCCTACAAATAACAATGTGAACAAACTAACCCCCCCTGACCAAGGGCACTTTGTCTACCCACCAACACCAGAAGTGAGCCCGCGATATCCATATGGATCATCTCACAGCTCCACCAATCAGCTATCGCCTCTTAGCCAATCAATGAACAGCTACAATCAAATGCATTCGTCATCAATGGGAAGTGATAATGCTCCAATGGCCACTAATTATGAAGTTCCTAGAGGGTACACTGCAATTGAGCGCTATTCCAACCATGACAGTGGGACTTTTCTCTCGCCACGCTCCAAGGGAACTGTGGGTAACACAAGCTACGCCATGTCGTCTACGTCAAGCAACATGCCTTATGAATATCATAGAAGCTTTTCTCCAATGGTTGTGGATCATGTCAAACACTACTCACAGTACCCCCTACCGGAAAGGAATTACCCATCAGGGTATATGTTTAGTCCCAGTGTCATGACGGGATCCAACTCAGTTTATCCTTTACAGTCGAGTACCAGCACTACTAACGAACGTTATTACCCGGATGTACTGGAAGAGTTTGTTGATATGCAGGCCGCTATGCACCATGGTATACCCAGTCGACCTGCGAGAGGGGATTACGGTTATACACCAGCAATTTTGACGAATTAG

Transcript

alvinactis_v1_g10040

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	RFX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02257	RFX_DNA_binding	RFX DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003150	Domain	DNA-binding RFX-type winged-helix domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR039779	Family	RFX-like DNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12619	RFX TRANSCRIPTION FACTOR FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-